From d05214694d6784fe39e34ebfbc45202c71917d44 Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Wed, 3 Oct 2018 12:57:12 +1000
Subject: refactor reference location to lib

---
 references.nix | 53 -----------------------------------------------------
 1 file changed, 53 deletions(-)
 delete mode 100755 references.nix

(limited to 'references.nix')

diff --git a/references.nix b/references.nix
deleted file mode 100755
index 72c1243..0000000
--- a/references.nix
+++ /dev/null
@@ -1,53 +0,0 @@
-{ bionix, nixpkgs }:
-
-with nixpkgs;
-
-rec {
-  grch38 = grch38-p12;
-  grch38-p12 = {
-    seq = stdenvNoCC.mkDerivation rec {
-        name = "seq-grch38.${version}";
-        version = "p12";
-        src = fetchurl {
-          url = "ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_28/GRCh38.p12.genome.fa.gz";
-          sha256 = "0ji2ggpmgnbpwbhq8mirj6h3lyy02nl2rnz7n892iq5cqpsblh4z";
-        };
-        buildCommand = "gunzip < $src > $out";
-      };
-    blacklist = stdenvNoCC.mkDerivation {
-      name = "blacklist-grch38";
-      src = fetchurl {
-        url = "http://mitra.stanford.edu/kundaje/akundaje/release/blacklists/hg38-human/hg38.blacklist.bed.gz";
-        sha256 = "1lpnqq1mjidbdxj5i6x26rxa8x1rs8q3hlf0z1z49j3jsnkgffky";
-      };
-      buildCommand = "gunzip < $src > $out";
-    };
-  };
-
-  grcm38 = grcm38-p6;
-  grcm38-p6 = {
-    seq = stdenvNoCC.mkDerivation rec {
-        name = "seq-grch38.${version}";
-        version = "p6";
-        src = fetchurl {
-          url = "ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M19/GRCm38.${version}.genome.fa.gz";
-          sha256 = "0ryiqab5bldpzawylsk2qpjxr2j701q03ww9jqyxhkimqpn9g3mr";
-        };
-        buildCommand = "gunzip < $src > $out";
-      };
-    };
-  };
-
-  mm10 = mm10-p4;
-  mm10-p4 = {
-      seq = stdenvNoCC.mkDerivation rec {
-          name = "seq-mm10.${version}";
-          version = "p4";
-          src = fetchurl {
-              url = "ftp://hgdownload.soe.ucsc.edu/goldenPath/mm10/mm10Patch4/mm10Patch4.fa.gz";
-              sha256 = "1660d6d05f3aa266c6053cfd1efef1747d9e854836917241d6f47cff7a55340c";
-              };
-          buildCommand = "gunzip < $src > $out";
-      };
-  };
-}
-- 
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