From 143394194d535fcfd5dcaa8dcbad98b50f48a7e5 Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Sun, 8 Nov 2020 09:38:01 +1100
Subject: draft HPC slide

---
 slides.tex | 17 +++++++++++++++++
 1 file changed, 17 insertions(+)

(limited to 'slides.tex')

diff --git a/slides.tex b/slides.tex
index 3b0016f..fe5bccf 100644
--- a/slides.tex
+++ b/slides.tex
@@ -1,5 +1,8 @@
 \documentclass[aspectratio=169]{beamer}
 
+\usepackage{fancyvrb}
+\usepackage{tgcursor}
+
 \usepackage{microtype}
 \usepackage{tikz}
 \usetikzlibrary{fit}
@@ -173,6 +176,19 @@
   \includegraphics[width=\linewidth]{demo-graph}
 \end{frame}
 
+\begin{frame}
+  \frametitle{HPC execution}
+  \begin{minipage}{.3\textwidth}
+  \includegraphics[width=\linewidth]{slurm}
+  \end{minipage}
+  \begin{minipage}{.68\textwidth}
+  \begin{enumerate}
+    \item Easy implementation due to derivation overloading pattern from Nix
+    \item Call \Verb|(bionix.slurm  \{ ... \}).samtools.sort| instead of \Verb|bionix.samtools.sort|
+  \end{enumerate}
+  \end{minipage}
+\end{frame}
+
 \begin{frame}
   \frametitle{Real-world usage at WEHI}
   \begin{enumerate}
@@ -180,6 +196,7 @@
     \item $\geq100$ WGS/WES samples totalling 20 TiB of primary data
     \item SNV calling, neoantigen prediction, structural variants, copy number, mutational signatures, and report generation
     \item CI ensures reports are always up to date and consistent across the cohort
+    \item Processed at Pawsey (Slurm) and WEHI (PBS \& Slurm)
   \end{enumerate}
 \end{frame}
 
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