From f1bfe038d1cea500084e0c27f468321489da49d8 Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Wed, 4 Nov 2020 09:07:45 +1100
Subject: add core problems slide

---
 slides.tex | 30 ++++++++++++++++++++++++++++++
 1 file changed, 30 insertions(+)

(limited to 'slides.tex')

diff --git a/slides.tex b/slides.tex
index 2a2cdad..c4fb08d 100644
--- a/slides.tex
+++ b/slides.tex
@@ -3,6 +3,10 @@
 \usepackage{microtype}
 \usepackage{tikz}
 \usetikzlibrary{fit}
+\usepackage[style=verbose-ibid,url=false,natbib=true]{biblatex}
+\addbibresource{references.bib}
+\renewcommand*{\footnotesize}{\Tiny}
+\setlength{\footnotesep}{3pt}
 
 \definecolor{bngreen}{HTML}{3c8e64}
 \definecolor{bnorange}{HTML}{e08919}
@@ -24,6 +28,32 @@
   \end{frame}
 }
 
+\begin{frame}
+  \frametitle{Core problems}
+  \begin{enumerate}
+    \item \emph{Managing software versions and dependencies}.
+      \begin{itemize}
+        \item Conda
+        \item BioConda~\autocite{Grning2018}
+        \item apt-get
+      \end{itemize}
+
+    \item \emph{Managing computational environments}.
+      \begin{itemize}
+        \item Docker
+        \item Singularity
+        \item \emph{virtual machines}
+      \end{itemize}
+
+    \item \emph{Managing workflows}.
+      \begin{itemize}
+        \item Toil~\autocite{toil}
+        \item SnakeMake~\autocite{Koster2012}
+        \item NextFlow~\autocite{di_tommaso_nextflow_2017}
+      \end{itemize}
+  \end{enumerate}
+\end{frame}
+
 \begin{frame}
   \begin{center}
     \begin{tikzpicture}[->,>=stealth,shorten >=1pt,auto,node distance=2cm,thick]
-- 
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