From 039b213f0a217f4787c04d40990006ee6d475173 Mon Sep 17 00:00:00 2001
From: l-d-s <distefano.l@wehi.edu.au>
Date: Thu, 29 Nov 2018 09:47:14 +1100
Subject: Revert "test-tnpair: avoid gridss.call while it's broken"

This reverts commit 01401aaee74dac39e0502688654ef02771a88cd7.
---
 test-tnpair.nix | 1 +
 1 file changed, 1 insertion(+)

(limited to 'test-tnpair.nix')

diff --git a/test-tnpair.nix b/test-tnpair.nix
index 0f6a441..a6ea163 100644
--- a/test-tnpair.nix
+++ b/test-tnpair.nix
@@ -54,6 +54,7 @@ let
       ln -s ${tnpairResult.variants} $out/strelka
       mkdir $out/alignments
       ln -s ${gridss.callVariants {} (with tnpairResult.alignments; [tumour])} $out/gridss
+      ln -s ${gridss.call (with tnpairResult.alignments; [tumour])} $out/gridss2
       ln -s ${samtools.merge {} [tnpairResult.alignments.tumour tnpairResult.alignments.normal]} $out/alignments/merged.bam
       ln -s ${samtools.view { outfmt = types.toCram; } (tnpairResult.alignments.tumour)} $out/alignments/${tnpair.tumour.name}.cram
       ln -s ${samtools.view { outfmt = types.toCram; } (tnpairResult.alignments.normal)} $out/alignments/${tnpair.normal.name}.cram
-- 
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