From 45af0256cf75fa28e75b6cf6874df0c48aac38cf Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Mon, 24 Sep 2018 14:12:37 +1000
Subject: use a map in the test pipeline

---
 test-tnpair.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'test-tnpair.nix')

diff --git a/test-tnpair.nix b/test-tnpair.nix
index 40cb442..b3a41cb 100644
--- a/test-tnpair.nix
+++ b/test-tnpair.nix
@@ -13,7 +13,7 @@ let
                normal = {name = "mysample2"; files = {input1 = ./example/sample2-1.fq; input2 = ./example/sample2-1.fq;};};};
 
   processPair = { tumour, normal }: rec {
-    alignments = { normal = sort(alignWithRG normal.name normal.files); tumour = sort (alignWithRG tumour.name tumour.files); };
+    alignments = mapAttrs (_: x: sort (alignWithRG x.name x.files)) { inherit normal tumour; };
     variants = callVariants alignments;
   };
 
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