From 4a7f5bfd34f53906901059c501aff9b5459eccf8 Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Tue, 17 Dec 2019 12:30:38 +1100
Subject: delly: init

---
 test-tnpair.nix | 1 +
 1 file changed, 1 insertion(+)

(limited to 'test-tnpair.nix')

diff --git a/test-tnpair.nix b/test-tnpair.nix
index 49c9bb9..8d9dc88 100644
--- a/test-tnpair.nix
+++ b/test-tnpair.nix
@@ -74,6 +74,7 @@ let
     strelka-indels = tnpairResult.variants.indels;
     "strelka.snvs.vcf" = tnpairResult.variants.snvs;
     "strelka.gl.vcf" = tnpairResult.glvariants;
+    delly = delly.call {} (with tnpairResult.alignments; [normal tumour]);
     manta = manta.call {} (with tnpairResult.alignments; {normals = [normal tumour]; });
     mantaTN = manta.call {} (with tnpairResult.alignments; {normals = [normal]; tumour = tumour;});
     mantaT = manta.call {} (with tnpairResult.alignments; {tumour = tumour;});
-- 
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