From 5a82b7a2361097e84d3a916f87c0ff6252d9167c Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Fri, 12 Apr 2019 09:58:39 +1000 Subject: minimap2: init --- test-tnpair.nix | 1 + 1 file changed, 1 insertion(+) (limited to 'test-tnpair.nix') diff --git a/test-tnpair.nix b/test-tnpair.nix index c88b68a..4a3a59e 100644 --- a/test-tnpair.nix +++ b/test-tnpair.nix @@ -49,6 +49,7 @@ let (ln (strelka.snvs tnpairResult.variants) "strelka.snvs.vcf") (ln (strelka.variants tnpairResult.glvariants) "strelka.gl.vcf") (ln (bowtie.align {inherit ref;} tnpair.normal.files) "alignments/bowtie-normal.bam") + (ln (minimap2.align {inherit ref; preset = "sr"; } tnpair.normal.files) "alignments/minimap2-normal.bam") (ln (gridss.callVariants {} (with tnpairResult.alignments; [normal tumour])) "gridss") (ln (gridss.call (with tnpairResult.alignments; [normal tumour])) "gridss2") (ln (gridss.callAndAssemble (with tnpairResult.alignments; [normal tumour])) "gridss3") -- cgit v1.2.3