From 5cdc23b7e62d1d0be67047ff95cd74e570a65922 Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Mon, 8 Jul 2019 10:23:54 +1000
Subject: tests: add kallisto test

---
 test-tnpair.nix | 1 +
 1 file changed, 1 insertion(+)

(limited to 'test-tnpair.nix')

diff --git a/test-tnpair.nix b/test-tnpair.nix
index afbdf68..5d9fee2 100644
--- a/test-tnpair.nix
+++ b/test-tnpair.nix
@@ -64,6 +64,7 @@ let
   };
 
   testNaming = linkOutputs {
+    kallisto = kallisto.quant {inherit ref;} (attrValues tnpair.tumour.files);
     facets = facets.callCNV {} {vcf = tnpairResult.platypusVars; bams = with tnpairResult.alignments; [ normal tumour ];};
     cnvkit = cnvkitResults.cnvs;
     "cnvkit.pdf" = cnvkitResults.plot;
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