From 6d22c07e9b0e8254da360b73bfab58b110118c58 Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Fri, 16 Aug 2019 09:34:30 +1000
Subject: xenomapper: init

---
 test-tnpair.nix | 1 +
 1 file changed, 1 insertion(+)

(limited to 'test-tnpair.nix')

diff --git a/test-tnpair.nix b/test-tnpair.nix
index 701748d..bb356b2 100644
--- a/test-tnpair.nix
+++ b/test-tnpair.nix
@@ -87,6 +87,7 @@ let
     "${tnpair.tumour.name}.fastp" = check-fastp tnpair.tumour.files;
     snver = snver.call { ploidy=1; } tnpairResult.alignments;
     mosdepth = mosdepth.plot {} { inputs = mapAttrsToList (_: mosdepth.depth {}) tnpairResult.alignments; names = [ "seq1" "seq2" ]; };
+    xenomapper = xenomapper.allocate {} { primary = nameSort tnpairResult.alignments.tumour; secondary = nameSort tnpairResult.alignments.tumour; };
     inherit alignments;
   };
 
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