From 8b97c7e8f685dd3c402e172ea15ef9716b529c8e Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Wed, 18 Dec 2019 09:54:54 +1100
Subject: lumpy: init

---
 test-tnpair.nix | 1 +
 1 file changed, 1 insertion(+)

(limited to 'test-tnpair.nix')

diff --git a/test-tnpair.nix b/test-tnpair.nix
index ae88549..38eb509 100644
--- a/test-tnpair.nix
+++ b/test-tnpair.nix
@@ -72,6 +72,7 @@ let
     "strelka.snvs.vcf" = tnpairResult.variants.snvs;
     "strelka.gl.vcf" = tnpairResult.glvariants;
     delly = delly.call {} (with tnpairResult.alignments; [normal tumour]);
+    lumpy = lumpy.call {} (with tnpairResult.alignments; [normal tumour]);
     manta = manta.call {} (with tnpairResult.alignments; {normals = [normal tumour]; });
     mantaTN = manta.call {} (with tnpairResult.alignments; {normals = [normal]; tumour = tumour;});
     mantaT = manta.call {} (with tnpairResult.alignments; {tumour = tumour;});
-- 
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