From a1d18efc18772a233aa759b622c3a9960824f109 Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Tue, 30 Apr 2019 09:47:49 +1000 Subject: cleanup examples and stray files --- test-tnpair.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'test-tnpair.nix') diff --git a/test-tnpair.nix b/test-tnpair.nix index cd8620a..1d281fa 100644 --- a/test-tnpair.nix +++ b/test-tnpair.nix @@ -49,8 +49,8 @@ let (ln (strelka.snvs tnpairResult.variants) "strelka.snvs.vcf") (ln (strelka.variants tnpairResult.glvariants) "strelka.gl.vcf") (ln (bowtie.align {inherit ref;} tnpair.normal.files) "alignments/bowtie-normal.bam") - (ln (minimap2.align {inherit ref; preset = "sr"; } tnpair.normal.files) "alignments/minimap2-normal.bam") - (ln (snap.align {inherit ref; } tnpair.normal.files) "alignments/snap-normal.bam") + #(ln (minimap2.align {inherit ref; preset = "sr"; } tnpair.normal.files) "alignments/minimap2-normal.bam") + #(ln (snap.align {inherit ref; } tnpair.normal.files) "alignments/snap-normal.bam") (ln (gridss.callVariants {} (with tnpairResult.alignments; [normal tumour])) "gridss") (ln (gridss.call (with tnpairResult.alignments; [normal tumour])) "gridss2") (ln (gridss.callAndAssemble (with tnpairResult.alignments; [normal tumour])) "gridss3") -- cgit v1.2.3