From c48e7b40c82326006136463282b803eebc648df0 Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Mon, 16 Dec 2019 20:43:04 +1100
Subject: manta: init

---
 test-tnpair.nix | 3 +++
 1 file changed, 3 insertions(+)

(limited to 'test-tnpair.nix')

diff --git a/test-tnpair.nix b/test-tnpair.nix
index f320f58..49c9bb9 100644
--- a/test-tnpair.nix
+++ b/test-tnpair.nix
@@ -74,6 +74,9 @@ let
     strelka-indels = tnpairResult.variants.indels;
     "strelka.snvs.vcf" = tnpairResult.variants.snvs;
     "strelka.gl.vcf" = tnpairResult.glvariants;
+    manta = manta.call {} (with tnpairResult.alignments; {normals = [normal tumour]; });
+    mantaTN = manta.call {} (with tnpairResult.alignments; {normals = [normal]; tumour = tumour;});
+    mantaT = manta.call {} (with tnpairResult.alignments; {tumour = tumour;});
     gridss = gridss.callVariants {} (with tnpairResult.alignments; [normal tumour]);
     gridss2 = gridss.call (with tnpairResult.alignments; [normal tumour]);
     gridss3 = gridss.callAndAssemble (with tnpairResult.alignments; [normal tumour]);
-- 
cgit v1.2.3