From f361afeab23a4e7b74e0f58bb64b142f6bc3652b Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Tue, 2 Jul 2019 16:02:54 +1000
Subject: CNVkit: split into multiple outputs

cnvkit: restructure out to link to multioutputs
---
 test-tnpair.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'test-tnpair.nix')

diff --git a/test-tnpair.nix b/test-tnpair.nix
index 7fe5750..701748d 100644
--- a/test-tnpair.nix
+++ b/test-tnpair.nix
@@ -51,7 +51,7 @@ let
 
   cnvkitResults = rec {
     cnvs = cnvkit.callCNV {} (with tnpairResult.alignments; { normals = [ normal ]; tumours = [ tumour ];});
-    plot = cnvkit.scatterPlot {} cnvs;
+    plot = cnvkit.scatterPlot {} cnvs.out1;
   };
 
   alignments = {
-- 
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