From 9c99509719704112c786c194f715c64aaa5b03de Mon Sep 17 00:00:00 2001
From: l-d-s <distefano.l@wehi.edu.au>
Date: Mon, 24 Sep 2018 12:04:51 +1000
Subject: Working test-tnpair

---
 test.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'test.nix')

diff --git a/test.nix b/test.nix
index 6c158c6..3bfaed6 100644
--- a/test.nix
+++ b/test.nix
@@ -4,7 +4,7 @@ with pkgs;
 with lib;
 
 let
-  ref = ../bioshake/examples/ref.fa;
+  ref = ./example/ref.fa;
   alignWithRG = rg: callPackage ./tools/bwa.nix { inherit ref; flags = "-R'@RG\\tID:${rg}\\tSM:${rg}'";};
   sort = callPackage ./tools/samtools-sort.nix { };
   callVariants = callPackage ./tools/platypus.nix { inherit ref; };
-- 
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