From c3babc9eb65dc8c56d07ce8a6ee0d8c03bbd223e Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Wed, 9 Jan 2019 16:38:42 +1100
Subject: large refactor

- use bionix.pkgs instead of nixpkgs
- replace stdenv.mkDerivation with stage
---
 tools/bwa-index.nix | 9 ++++-----
 1 file changed, 4 insertions(+), 5 deletions(-)

(limited to 'tools/bwa-index.nix')

diff --git a/tools/bwa-index.nix b/tools/bwa-index.nix
index c879bc4..17b651f 100644
--- a/tools/bwa-index.nix
+++ b/tools/bwa-index.nix
@@ -1,19 +1,18 @@
 { bionix
-, nixpkgs
 , flags ? null
 }:
 
 ref:
 
-with nixpkgs;
+with bionix;
 with lib;
-with bionix.types;
+with types;
 
 assert (matchFiletype "bwa-index" { fa = _: true; } ref);
 
-stdenv.mkDerivation {
+stage {
   name = "bwa-index";
-  buildInputs = [ bwa ];
+  buildInputs = with pkgs; [ bwa ];
   buildCommand = ''
     ln -s ${ref} ref.fa
     bwa index ${optionalString (flags != null) flags} ref.fa
-- 
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