From 3c568bacd397a3ddcb203811f7fa5a1f8af760a3 Mon Sep 17 00:00:00 2001
From: l-d-s <distefano.l@wehi.edu.au>
Date: Thu, 15 Nov 2018 17:25:53 +1100
Subject: Fix up gridss config file.

---
 tools/gridss-annotateVariants.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'tools/gridss-annotateVariants.nix')

diff --git a/tools/gridss-annotateVariants.nix b/tools/gridss-annotateVariants.nix
index 4422cd6..6c8fbc6 100644
--- a/tools/gridss-annotateVariants.nix
+++ b/tools/gridss-annotateVariants.nix
@@ -65,7 +65,7 @@ stdenv.mkDerivation rec {
       INPUT_VCF=input.vcf \
       OUTPUT_VCF=out.vcf \
       WORKING_DIR=$TMPDIR/ \
-      ${optionalString (config != null) ("CONFIGURATION_FILE=" + gridssConfig config)} \
+      ${optionalString (config != null) ("CONFIGURATION_FILE=" +  bionix.gridss.ggridssConfig config)} \
       TMP_DIR=$TMPDIR/
 
     mv out.vcf $out
-- 
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