From bac9248a5e08e8afdf5485a6e27cfe72e1ca5090 Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Fri, 29 Oct 2021 17:39:01 +1100
Subject: treewide reformatting and simplification

- simplify with statix
- reformat with nixpkgs-fmt
---
 tools/gridss-assemble.nix | 14 +++++++-------
 1 file changed, 7 insertions(+), 7 deletions(-)

(limited to 'tools/gridss-assemble.nix')

diff --git a/tools/gridss-assemble.nix b/tools/gridss-assemble.nix
index 1a46eae..15e5ca6 100644
--- a/tools/gridss-assemble.nix
+++ b/tools/gridss-assemble.nix
@@ -1,12 +1,12 @@
 { bionix
-, bwaIndexAttrs ? {}
-, faidxAttrs ? {}
-, indexAttrs ? {}
-, collectMetricsAttrs ? {}
+, bwaIndexAttrs ? { }
+, faidxAttrs ? { }
+, indexAttrs ? { }
+, collectMetricsAttrs ? { }
 , flags ? null
 , config ? null
 , heapSize ? "31g"
-, workdirs ? []
+, workdirs ? [ ]
 , jobIndex ? null
 , jobNodes ? null
 }:
@@ -36,7 +36,7 @@ let
 in
 
 assert (all sorted inputs);
-assert (homoRef);
+assert homoRef;
 
 stage rec {
   name = "gridss-assemble";
@@ -70,6 +70,6 @@ stage rec {
     touch $out
     cp -r out.gridss.working $work
   '';
-  passthru.filetype = filetype.bam { ref = ref; sorting = sort.none {}; };
+  passthru.filetype = filetype.bam { inherit ref; sorting = sort.none { }; };
   passthru.multicore = true;
 }
-- 
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