From d79fc6785f2b8714fa2762bd07a9a9f937bf4513 Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Tue, 11 Dec 2018 14:11:21 +1100
Subject: gridss: fix softClipsToSplitReads after assembly

---
 tools/gridss-assemble.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'tools/gridss-assemble.nix')

diff --git a/tools/gridss-assemble.nix b/tools/gridss-assemble.nix
index 847830a..a8124e0 100644
--- a/tools/gridss-assemble.nix
+++ b/tools/gridss-assemble.nix
@@ -55,5 +55,5 @@ stdenv.mkDerivation rec {
       WORKING_DIR=$TMPDIR/ \
       TMP_DIR=$TMPDIR/
   '';
-  passthru.filetype = filetype.bam { ref = ref; sorting = sort.coord {}; };
+  passthru.filetype = filetype.bam { ref = ref; sorting = sort.name {}; };
 }
-- 
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