From dbbfc5655b840e9cd1d10993b411376ec0a90135 Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Thu, 28 Mar 2019 13:40:31 +1100
Subject: gridss: less chatty logs

---
 tools/gridss-assemble.nix | 1 +
 1 file changed, 1 insertion(+)

(limited to 'tools/gridss-assemble.nix')

diff --git a/tools/gridss-assemble.nix b/tools/gridss-assemble.nix
index 27bbe32..14f39c8 100644
--- a/tools/gridss-assemble.nix
+++ b/tools/gridss-assemble.nix
@@ -48,6 +48,7 @@ stage rec {
     ${concatMapStringsSep "\n" linkInput inputs}
 	  java -Xmx${heapSize} -Dsamjdk.create_index=true \
       -cp ${bionix.gridss.jar} gridss.AssembleBreakends \
+      VERBOSITY=WARNING \
       REFERENCE_SEQUENCE=ref.fa \
       ${concatMapStringsSep " " (i: "INPUT='${i}'") inputs} \
       WORKER_THREADS=$NIX_BUILD_CORES \
-- 
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