From 3c568bacd397a3ddcb203811f7fa5a1f8af760a3 Mon Sep 17 00:00:00 2001
From: l-d-s <distefano.l@wehi.edu.au>
Date: Thu, 15 Nov 2018 17:25:53 +1100
Subject: Fix up gridss config file.

---
 tools/gridss-identifyVariants.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'tools/gridss-identifyVariants.nix')

diff --git a/tools/gridss-identifyVariants.nix b/tools/gridss-identifyVariants.nix
index 87d418b..a53fcb7 100644
--- a/tools/gridss-identifyVariants.nix
+++ b/tools/gridss-identifyVariants.nix
@@ -61,7 +61,7 @@ stdenv.mkDerivation rec {
       ${concatMapStringsSep " " (i: "INPUT='${i}'") inputs} \
       ASSEMBLY=${assembly} \
       OUTPUT_VCF=out.vcf \
-      ${optionalString (config != null) ("CONFIGURATION_FILE=" + gridssConfig config)} \
+      ${optionalString (config != null) ("CONFIGURATION_FILE=" + bionix.gridss.gridssConfig config)} \
       WORKING_DIR=$TMPDIR/ \
       TMP_DIR=$TMPDIR/
 
-- 
cgit v1.2.3