From 4574deb8e1649eaf63df424585d11645c7cfa7dd Mon Sep 17 00:00:00 2001
From: l-d-s <l@sdf.org>
Date: Mon, 12 Nov 2018 16:54:30 +1100
Subject: Attempt to integrate config file into GRIDSS stage

---
 tools/gridss.nix | 1 +
 1 file changed, 1 insertion(+)

(limited to 'tools/gridss.nix')

diff --git a/tools/gridss.nix b/tools/gridss.nix
index d46a8ce..bc2f0b8 100644
--- a/tools/gridss.nix
+++ b/tools/gridss.nix
@@ -8,6 +8,7 @@ rec {
     url = "https://github.com/PapenfussLab/gridss/releases/download/v2.0.0/gridss-2.0.0-gridss-jar-with-dependencies.jar";
     sha256 = "01srl3qvv060whqg1y1fpxjc5cwga5wscs1bmf1v3z87dignra7k";
   };
+  gridssConfig = callBionix ./gridss-configFile.nix {};
   callVariants = callBionix ./gridss-callVariants.nix;
   computeSamTags = callBionix ./gridss-computeSamTags.nix;
   softClipsToSplitReads = callBionix ./gridss-softClipsToSplitReads.nix;
-- 
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