From bac9248a5e08e8afdf5485a6e27cfe72e1ca5090 Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Fri, 29 Oct 2021 17:39:01 +1100
Subject: treewide reformatting and simplification

- simplify with statix
- reformat with nixpkgs-fmt
---
 tools/samtools-sort.nix | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

(limited to 'tools/samtools-sort.nix')

diff --git a/tools/samtools-sort.nix b/tools/samtools-sort.nix
index e3fbff8..30439f1 100644
--- a/tools/samtools-sort.nix
+++ b/tools/samtools-sort.nix
@@ -17,9 +17,10 @@ assert (matchFiletype "samtools-sort" { bam = _: true; sam = _: true; cram = _:
 
 let
   outfmtR = if outfmt != null then outfmt input else input.filetype;
-  outFmtFlags = matchFiletype "samtools-sort-outfmt" { bam = _: "-O BAM"; sam = _: "-O SAM"; cram = ref: "-O CRAM -T ${ref}"; } {filetype = outfmtR;};
-  alreadySorted = matchFileSorting "samtools-sort" { name = _: nameSort; coord = _: !nameSort; none = _: false;} input;
-in stage {
+  outFmtFlags = matchFiletype "samtools-sort-outfmt" { bam = _: "-O BAM"; sam = _: "-O SAM"; cram = ref: "-O CRAM -T ${ref}"; } { filetype = outfmtR; };
+  alreadySorted = matchFileSorting "samtools-sort" { name = _: nameSort; coord = _: !nameSort; none = _: false; } input;
+in
+stage {
   name = "samtools-sort";
   buildInputs = with pkgs; [ samtools ];
   buildCommand =
-- 
cgit v1.2.3