From c6ea8db2830f99195cc74bc3e59992324a8c0480 Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Thu, 10 Jan 2019 07:43:04 +1100
Subject: refactor missed stages

---
 tools/samtools-sort.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'tools/samtools-sort.nix')

diff --git a/tools/samtools-sort.nix b/tools/samtools-sort.nix
index 6f9eb33..d01c83f 100644
--- a/tools/samtools-sort.nix
+++ b/tools/samtools-sort.nix
@@ -19,7 +19,7 @@ let
   outfmtR = if outfmt != null then outfmt input else input.filetype;
   outFmtFlags = matchFiletype "samtools-sort-outfmt" { bam = _: "-O BAM"; sam = _: "-O SAM"; cram = ref: "-O CRAM -T ${ref}"; } {filetype = outfmtR;};
   alreadySorted = matchFileSorting "samtools-sort" { name = _: nameSort; coord = _: !nameSort; none = _: false;} input;
-in pkgs.stdenv.mkDerivation {
+in stage {
   name = "samtools-sort";
   buildInputs = with pkgs; [ samtools ];
   buildCommand =
-- 
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