From 10bdecf6c1338d7f531ddf7b41da14dfe4a4ac33 Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Tue, 11 Dec 2018 14:11:52 +1100
Subject: samtools-sort: fix reversed link for identity sort

---
 tools/samtools-sort.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'tools/samtools-sort.nix')

diff --git a/tools/samtools-sort.nix b/tools/samtools-sort.nix
index e77f3db..37df5c8 100644
--- a/tools/samtools-sort.nix
+++ b/tools/samtools-sort.nix
@@ -25,7 +25,7 @@ in stdenv.mkDerivation {
   buildInputs = [ samtools ];
   buildCommand =
     if alreadySorted then
-      "ln -s $out ${input}"
+      "ln -s ${input} $out"
     else
       ''
         samtools sort -@ $NIX_BUILD_CORES \
-- 
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