From 96c9a8880a690d2d8058663a805c3b363e416a8d Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Wed, 9 Feb 2022 12:13:59 +1100
Subject: don't strip store paths from bams

Due to BAM compression attempting to strip store
paths is a waste of time.
---
 tools/snap-align.nix | 1 +
 1 file changed, 1 insertion(+)

(limited to 'tools/snap-align.nix')

diff --git a/tools/snap-align.nix b/tools/snap-align.nix
index f0bcb21..dca3e9f 100644
--- a/tools/snap-align.nix
+++ b/tools/snap-align.nix
@@ -35,4 +35,5 @@ stage {
   '';
   passthru.filetype = if bamOutput then filetype.bam { inherit ref; sorting = sort.none { }; } else filetype.sam { inherit ref; sorting = sort.name { }; };
   passthru.multicore = true;
+  stripStorePaths = false;
 }
-- 
cgit v1.2.3