From 0c09091762accf8716ef7853dded34e1c86497aa Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Wed, 17 Apr 2019 19:06:00 +1000
Subject: snap: init

---
 tools/snap.nix | 17 +++++++++++++++++
 1 file changed, 17 insertions(+)
 create mode 100644 tools/snap.nix

(limited to 'tools/snap.nix')

diff --git a/tools/snap.nix b/tools/snap.nix
new file mode 100644
index 0000000..851c51a
--- /dev/null
+++ b/tools/snap.nix
@@ -0,0 +1,17 @@
+{ bionix }:
+
+with bionix;
+
+rec {
+  app = pkgs.callPackage ./snap-app.nix {};
+
+  /* Align reads against a reference
+  Type: snap :: {ref :: fasta, bamOutput :: bool, ...} -> {input1, input2} -> bam/sam
+  */
+  align = callBionixE ./snap-align.nix;
+
+  /* Creates an reference index for SNAP
+  Type: index :: {...} -> fasta -> SNAP index
+  */
+  index = callBionixE ./snap-index.nix;
+}
-- 
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