From 25515012d0051a4074de0e4692b7fd336c7ddf4a Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Wed, 9 Feb 2022 12:22:30 +1100 Subject: whisper: fix sorting for sam output --- tools/whisper-align.nix | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) (limited to 'tools') diff --git a/tools/whisper-align.nix b/tools/whisper-align.nix index e76e921..38bcedf 100644 --- a/tools/whisper-align.nix +++ b/tools/whisper-align.nix @@ -35,7 +35,7 @@ stage { ${optionalString (input2 != null) (fq input2)} \ > $out ''; - passthru.filetype = if bamOutput then filetype.bam { inherit ref; sorting = sort.none { }; } else filetype.sam { inherit ref; sorting = sort.name { }; }; + passthru.filetype = if bamOutput then filetype.bam { inherit ref; sorting = sort.none { }; } else filetype.sam { inherit ref; sorting = sort.none { }; }; passthru.multicore = true; stripStorePaths = false; } -- cgit v1.2.3