From 25515012d0051a4074de0e4692b7fd336c7ddf4a Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Wed, 9 Feb 2022 12:22:30 +1100
Subject: whisper: fix sorting for sam output

---
 tools/whisper-align.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'tools')

diff --git a/tools/whisper-align.nix b/tools/whisper-align.nix
index e76e921..38bcedf 100644
--- a/tools/whisper-align.nix
+++ b/tools/whisper-align.nix
@@ -35,7 +35,7 @@ stage {
       ${optionalString (input2 != null) (fq input2)} \
       > $out
   '';
-  passthru.filetype = if bamOutput then filetype.bam { inherit ref; sorting = sort.none { }; } else filetype.sam { inherit ref; sorting = sort.name { }; };
+  passthru.filetype = if bamOutput then filetype.bam { inherit ref; sorting = sort.none { }; } else filetype.sam { inherit ref; sorting = sort.none { }; };
   passthru.multicore = true;
   stripStorePaths = false;
 }
-- 
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