From 4ee3f9f9c24b7dcdaa1be19aadd84454219c43f6 Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Fri, 26 Oct 2018 07:59:04 +1100
Subject: init: samtools-dict

---
 tools/samtools-dict.nix | 20 ++++++++++++++++++++
 tools/samtools.nix      |  1 +
 2 files changed, 21 insertions(+)
 create mode 100644 tools/samtools-dict.nix

(limited to 'tools')

diff --git a/tools/samtools-dict.nix b/tools/samtools-dict.nix
new file mode 100644
index 0000000..80ec1e0
--- /dev/null
+++ b/tools/samtools-dict.nix
@@ -0,0 +1,20 @@
+{ bionix
+, nixpkgs
+, flags ? null
+}:
+
+input:
+
+with nixpkgs;
+with lib;
+with bionix.types;
+
+assert (matchFiletype "samtools-dict" { fa = _: true; } input);
+
+stdenv.mkDerivation {
+  name = "samtools-dict";
+  buildInputs = [ samtools ];
+  buildCommand = ''
+    samtools dict ${optionalString (flags != null) flags} ${input} > $out
+  '';
+}
diff --git a/tools/samtools.nix b/tools/samtools.nix
index a05f53a..ea773eb 100644
--- a/tools/samtools.nix
+++ b/tools/samtools.nix
@@ -7,6 +7,7 @@ with bionix;
   faidx = callBionix ./samtools-faidx.nix;
   flagstat = callBionix ./samtools-flagstat.nix;
   index = callBionix ./samtools-index.nix;
+  dict = callBionix ./samtools-dict.nix;
   sort = callBionix ./samtools-sort.nix;
   merge = callBionix ./samtools-merge.nix;
 }
-- 
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