From 7c61159d7ed296fce82c7518af4a4936e55990fd Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Fri, 6 Sep 2019 16:13:53 +1000
Subject: strelka: also strip command line from output

---
 tools/strelka-call.nix        | 1 +
 tools/strelka-callSomatic.nix | 1 +
 2 files changed, 2 insertions(+)

(limited to 'tools')

diff --git a/tools/strelka-call.nix b/tools/strelka-call.nix
index a37c2aa..74dfd0b 100644
--- a/tools/strelka-call.nix
+++ b/tools/strelka-call.nix
@@ -48,6 +48,7 @@ out = stage {
       g=$(basename $f .gz)
       sed -i '/^##fileDate/d' $g
       sed -i '/^##startTime/d' $g
+      sed -i '/^##cmd/d' $g
     done
     mv variants.vcf $out
   '';
diff --git a/tools/strelka-callSomatic.nix b/tools/strelka-callSomatic.nix
index ec57b8c..fd58d33 100644
--- a/tools/strelka-callSomatic.nix
+++ b/tools/strelka-callSomatic.nix
@@ -52,6 +52,7 @@ out = stage {
       g=$(basename $f .gz)
       sed -i '/^##fileDate/d' $g
       sed -i '/^##startTime/d' $g
+      sed -i '/^##cmd/d' $g
     done
     mv somatic.indels.vcf $indels
     mv somatic.snvs.vcf $snvs
-- 
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