From c45a6b1c1b68cd08efe55ec1df197c0c26b5ca49 Mon Sep 17 00:00:00 2001
From: l-d-s <distefano.l@wehi.edu.au>
Date: Wed, 7 Nov 2018 10:03:20 +1100
Subject: Add bwa to softClipsToSplitReads

---
 tools/gridss-softClipsToSplitReads.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'tools')

diff --git a/tools/gridss-softClipsToSplitReads.nix b/tools/gridss-softClipsToSplitReads.nix
index 8a7dca3..cc40e52 100644
--- a/tools/gridss-softClipsToSplitReads.nix
+++ b/tools/gridss-softClipsToSplitReads.nix
@@ -20,7 +20,7 @@ assert (matchFileSorting "gridss-softClipsToSplitReads" { name = _: true; } inpu
 
 stdenv.mkDerivation rec {
   name = "gridss-softClipsToSplitReads";
-  buildInputs = [ jre ];
+  buildInputs = [ jre bwa ];
   buildCommand = ''
     ln -s ${ref} ref.fa
     ln -s ${bionix.samtools.faidx faidxAttrs ref} ref.fa.fai
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