From ceb73223717abfb0de1a0905833b0cbac0b3fa23 Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Fri, 2 Nov 2018 16:11:29 +1100 Subject: Allow bwa-mem to take gzipped fastq inputs --- tools/bwa-mem.nix | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) (limited to 'tools') diff --git a/tools/bwa-mem.nix b/tools/bwa-mem.nix index 3420294..2b3bc64 100644 --- a/tools/bwa-mem.nix +++ b/tools/bwa-mem.nix @@ -17,7 +17,7 @@ with bionix.compression; let fa = f: matchFiletype "bwa-ref" { fa = _: f; } f; - fq = f: matchFiletype "bwa-input" { fq = _: f; } f; + fq = f: matchFiletype "bwa-input" { fq = _: f; gz = matchFiletype' "bwa-input" { fq = _: f; }; } f; in stdenv.mkDerivation { name = "bwa-mem"; -- cgit v1.2.3