From fc09e84a593aaedc1a23b17f0b1d8dda2df606df Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Wed, 12 Jan 2022 11:02:37 +1100
Subject: gridss: add somatic variant filtering

---
 tools/gridss.nix | 2 ++
 1 file changed, 2 insertions(+)

(limited to 'tools')

diff --git a/tools/gridss.nix b/tools/gridss.nix
index f52eb6e..f5b1e0e 100644
--- a/tools/gridss.nix
+++ b/tools/gridss.nix
@@ -100,4 +100,6 @@ rec {
   # As call but include assemblies in output
   callAndAssemble = inputs:
     gridss.annotateAndAssemble { } (map gridss.preprocessBam inputs);
+
+  filterSomatic = callBionixE ./gridss-somatic-filter.nix;
 }
-- 
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