From d483c1112e838440f332efece783b20d980d42af Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Tue, 2 Aug 2016 16:27:11 +1000
Subject: Initial implementation

---
 man/pmt-package.Rd | 26 ++++++++++++++++++++++++++
 man/pmt.Rd         | 33 +++++++++++++++++++++++++++++++++
 2 files changed, 59 insertions(+)
 create mode 100644 man/pmt-package.Rd
 create mode 100644 man/pmt.Rd

(limited to 'man')

diff --git a/man/pmt-package.Rd b/man/pmt-package.Rd
new file mode 100644
index 0000000..5c653d1
--- /dev/null
+++ b/man/pmt-package.Rd
@@ -0,0 +1,26 @@
+\name{pmt-package}
+\alias{pmt-package}
+\alias{pmt}
+\docType{package}
+\title{
+\packageTitle{pmt}
+Poisson Margin Test
+}
+\description{
+\packageDescription{pmt}
+Computes p-values using the Poission Margin Test for two vectors of counts arising from NGS data.
+}
+\details{
+\packageDESCRIPTION{pmt}
+\packageIndices{pmt}
+}
+\author{
+\packageAuthor{pmt}
+
+Maintainer: \packageMaintainer{pmt}
+}
+\references{
+Kowalczyk, A., Bedő, J., Conway, T., Beresford-Smith, B., 2011. The Poisson margin test for normalization-free significance analysis of NGS data. Journal of Computational Biology 18, 391–400. doi:10.1089/cmb.2010.0272
+}
+\keyword{NGS}
+\keyword{Poisson}
diff --git a/man/pmt.Rd b/man/pmt.Rd
new file mode 100644
index 0000000..c9e0250
--- /dev/null
+++ b/man/pmt.Rd
@@ -0,0 +1,33 @@
+\name{pmt}
+\alias{pmt}
+\title{Poisson Margin Test}
+\description{
+  Computes p-values for two sets of counts using the Poisson Margin Test.
+}
+\usage{
+pmt(a, b)
+}
+\arguments{
+  \item{a}{
+    Vector of counts
+}
+  \item{b}{
+    Vector of counts
+}
+}
+\details{
+  This function computes the Poisson Margin Test (PMT) for two sets of counts.
+}
+\value{
+  A vector of log10 p-values is returned, corresponding to the input vectors.
+}
+\references{
+Kowalczyk, A., Bedő, J., Conway, T., Beresford-Smith, B., 2011. The Poisson margin test for normalization-free significance analysis of NGS data. Journal of Computational Biology 18, 391–400. doi:10.1089/cmb.2010.0272
+}
+\author{
+  Justin Bedő
+}
+%\examples{
+%}
+\keyword{NGS}
+\keyword{Poisson}
-- 
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