From 95a461636cc65274ec80aea2d7b0316dfe13496f Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Thu, 29 Jul 2021 18:26:11 +1000 Subject: add nix run instructions to readme --- README | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/README b/README index 87b50ee..063dcc5 100644 --- a/README +++ b/README @@ -2,7 +2,7 @@ This is a reimplementation of Xenomapper [1] in Haskell. Unlike the orginal it is significantly more focused in scope: only primary specific alignments are output. -Example usage: "xenomapper-hs primary-specific.bam primary.bam secondary.bam" +Example usage: "xenomapper primary-specific.bam primary.bam secondary.bam" The first argument is the output bam path, and the subsequent are the primary and secondary alignments. NB: the inputs must be name sorted @@ -16,7 +16,9 @@ to build, or if you have already cloned the repository then simply nix build -in the root. +in the root. You can also just: + + nix run git://vk3.wtf/xenomapper-hs.git primary-specific.bam primary.bam secondary.bam -- 1: https://github.com/genomematt/xenomapper -- cgit v1.2.3