From c981a0dbd43709dbc5007c04fe550b9dcd0860c7 Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Thu, 29 Jul 2021 18:27:34 +1000 Subject: reword readme --- README | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README b/README index 063dcc5..d00b226 100644 --- a/README +++ b/README @@ -2,7 +2,7 @@ This is a reimplementation of Xenomapper [1] in Haskell. Unlike the orginal it is significantly more focused in scope: only primary specific alignments are output. -Example usage: "xenomapper primary-specific.bam primary.bam secondary.bam" +Example usage: "xenomapper output.bam primary-input.bam secondary-input.bam" The first argument is the output bam path, and the subsequent are the primary and secondary alignments. NB: the inputs must be name sorted @@ -18,7 +18,7 @@ to build, or if you have already cloned the repository then simply in the root. You can also just: - nix run git://vk3.wtf/xenomapper-hs.git primary-specific.bam primary.bam secondary.bam + nix run git://vk3.wtf/xenomapper-hs.git output.bam primary-input.bam secondary-input.bam -- 1: https://github.com/genomematt/xenomapper -- cgit v1.2.3