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@@ -0,0 +1,23 @@ +This is a reimplementation of Xenomapper [1] in Haskell. Unlike the +orginal it is significantly more focused in scope: only primary specific +alignments are output. + +Example usage: "xenomapper-hs primary-specific.bam primary.bam secondary.bam" + +The first argument is the output bam path, and the subsequent are the +primary and secondary alignments. NB: the inputs must be name sorted +and the output will be name sorted. + +Building the binary requires a flake enabled Nix [2]. Run + + nix build git://vk3.wtf/xenomapper-hs.git + +to build, or if you have already cloned the repository then simply + + nix build + +in the root. + +-- +1: https://github.com/genomematt/xenomapper +2: https://nixos.org/Nix |