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| author | Justin Bedo <cu@cua0.org> | 2022-10-10 13:22:03 +1100 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2022-10-12 09:09:01 +1100 |
| commit | ac3a4e0363c1fde0f1dbff75b95aa27d9acd5e5e (patch) | |
| tree | 117083afffdc77dfa0b768901338b93999550bb8 /day2/ex4-bwa/solution.nix | |
| parent | 059034ab3d5c40c8ef0350c440d4ae343802ec5c (diff) | |
insert exercise 4
Diffstat (limited to 'day2/ex4-bwa/solution.nix')
| -rw-r--r-- | day2/ex4-bwa/solution.nix | 19 |
1 files changed, 0 insertions, 19 deletions
diff --git a/day2/ex4-bwa/solution.nix b/day2/ex4-bwa/solution.nix deleted file mode 100644 index 79fc7dc..0000000 --- a/day2/ex4-bwa/solution.nix +++ /dev/null @@ -1,19 +0,0 @@ -{bionix}: -with bionix; let - input = { - input1 = fetchFastQ { - url = "https://raw.githubusercontent.com/PapenfussLab/bionix/master/examples/sample1-1.fq"; - sha256 = "sha256-qE6s8hKowiz3mvCq8/7xAzUz77xG9rAcsI2E50xMAk4="; - }; - input2 = fetchFastQ { - url = "https://raw.githubusercontent.com/PapenfussLab/bionix/master/examples/sample1-2.fq"; - sha256 = "sha256-s02R49HX/qeJp4t/eZwsKwV9D07uLGId8CEpU2dB8zM="; - }; - }; - - ref = fetchFastA { - url = "https://raw.githubusercontent.com/PapenfussLab/bionix/master/examples/ref.fa"; - sha256 = "sha256-V3zqOJFuGtukDRQttK/pGfKofgOlKrridHaWYhGGyWs="; - }; -in - samtools.sort {} (bwa.align {inherit ref;} input) |