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authorJustin Bedo <cu@cua0.org>2020-11-09 09:16:22 +1100
committerJustin Bedo <cu@cua0.org>2020-11-09 09:16:22 +1100
commite1fcfc02234076c01b81f6b94eedc8cc86a3e381 (patch)
treee1b12fc5e9a635ba30bce4ab72320e1d9a027dbd
parent69f3a402590b503b4be62cca355dd8de47dc3bf9 (diff)
logo plus editing
-rw-r--r--slides.tex21
-rw-r--r--wehi.pdfbin0 -> 320241 bytes
2 files changed, 16 insertions, 5 deletions
diff --git a/slides.tex b/slides.tex
index 4a66d0d..125469d 100644
--- a/slides.tex
+++ b/slides.tex
@@ -151,12 +151,13 @@
\frametitle{What is BioNix?}
\begin{enumerate}
\item Thin wrapper on Nix
- \item Models \emph{stages}\footnote{the execution of one or more executables on one or more input files, producing one or more output files.} as functions (\texttt{config → inputs → drv})
+ \item Models \emph{stages}\footnote{the execution of one or more executables on one or more input files, producing one or more output files.} as functions (\Verb|config → inputs → drv|)
\item Library of bioinformatics tools (BWA, samtools, etc) organised into a tree, e.g.,
\begin{itemize}
\item \Verb|bionix.bwa.align|
\item \Verb|bionix.samtools.sort|
\end{itemize}
+ \item Functions for HPC execution
\end{enumerate}
\end{frame}
@@ -183,12 +184,16 @@
\begin{frame}
\frametitle{HPC execution}
\begin{minipage}{.3\textwidth}
- \includegraphics[width=\linewidth]{slurm}
+ \begin{overprint}
+ \onslide<1>\includegraphics[width=\linewidth]{slurm}
+ \onslide<2>\includegraphics[width=\linewidth]{cluster}
+ \end{overprint}
\end{minipage}
\begin{minipage}{.68\textwidth}
\begin{enumerate}
\item Easy implementation due to derivation overloading pattern from Nix
\item Call \Verb|(bionix.slurm \{ ... \}).samtools.sort| instead of \Verb|bionix.samtools.sort|
+ \onslide<2>\item Easy to shift previous example to HPC execution
\end{enumerate}
\end{minipage}
\end{frame}
@@ -206,13 +211,13 @@
\begin{frame}
\frametitle{Acknowledgements}
- \begin{minipage}{0.32\linewidth}
+ \begin{minipage}{0.28\linewidth}
\begin{itemize}
\item Leon Di Stefano
\item Tony Papenfuss
\end{itemize}
\end{minipage}
- \begin{minipage}{0.32\linewidth}
+ \begin{minipage}{0.30\linewidth}
\begin{block}{Papenfuss Lab}
\begin{itemize}
\item Alan Rubin
@@ -221,10 +226,16 @@
\end{itemize}
\end{block}
\end{minipage}
- \begin{minipage}{0.32\linewidth}
+ \begin{minipage}{0.4\linewidth}
\begin{block}{Stafford Fox Rare Cancer Team}
\end{block}
+ \begin{block}{Stafford Fox Medical Research Foundation}
+ \end{block}
\end{minipage}
+ \vspace{1cm}
+ \begin{center}
+ \includegraphics[height=1cm]{wehi}
+ \end{center}
\end{frame}
\end{document}
diff --git a/wehi.pdf b/wehi.pdf
new file mode 100644
index 0000000..7f5409d
--- /dev/null
+++ b/wehi.pdf
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