diff options
| author | Justin Bedo <cu@cua0.org> | 2019-01-10 11:47:05 +1100 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2019-01-10 11:47:05 +1100 |
| commit | 5cb6f6001ea3aefd52ebaf42c1714343d51a8822 (patch) | |
| tree | 34235ce75e24e5754946813c263ace635e1ea532 /default.nix | |
| parent | 1b5e2b206d00967100e4ddf48c48ba0662bb0eb9 (diff) | |
cnvkit: init
Diffstat (limited to 'default.nix')
| -rw-r--r-- | default.nix | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/default.nix b/default.nix index c50e063..3ed2b50 100644 --- a/default.nix +++ b/default.nix @@ -13,8 +13,9 @@ let types = callBionix ./lib/types.nix {}; - bwa = callBionix ./tools/bwa.nix {}; bowtie = callBionix ./tools/bowtie.nix {}; + bwa = callBionix ./tools/bwa.nix {}; + cnvkit = callBionix ./tools/cnvkit.nix {}; compression = callBionix ./tools/compression.nix {}; crumble = callBionix ./tools/crumble.nix {}; fastqc = callBionix ./tools/fastqc.nix {}; @@ -25,9 +26,8 @@ let mutect = callBionix ./tools/mutect.nix {}; platypus = callBionix ./tools/platypus.nix {}; samtools = callBionix ./tools/samtools.nix {}; - strelka = callBionix ./tools/strelka.nix {}; snpeff = callBionix ./tools/snpeff.nix {}; - + strelka = callBionix ./tools/strelka.nix {}; ref = callBionix ./lib/references.nix {}; qsub = attrs: bionix.extend (self: super: with self; rec { |