diff options
| author | Justin Bedo <cu@cua0.org> | 2018-09-26 10:53:53 +1000 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2018-09-26 10:53:53 +1000 |
| commit | 98672cb1bba7221c5c8ecc363243cb47fcd13f47 (patch) | |
| tree | c5c73fc08323a8350a0ba80aae7a7232fed19171 /default.nix | |
| parent | 45af0256cf75fa28e75b6cf6874df0c48aac38cf (diff) | |
refactor, add mosdepth, and fixes for bwa
Diffstat (limited to 'default.nix')
| -rw-r--r-- | default.nix | 14 |
1 files changed, 14 insertions, 0 deletions
diff --git a/default.nix b/default.nix new file mode 100644 index 0000000..a9fb72b --- /dev/null +++ b/default.nix @@ -0,0 +1,14 @@ +{nixpkgs ? import <nixpkgs> {}}: + +let + bionix = nixpkgs.lib.makeExtensible (self: + let callBionix = file: import file { bionix = self; nixpkgs = nixpkgs; }; + in with self; { + bwa = callBionix ./tools/bwa.nix; + mosdepth = callBionix ./tools/mosdepth.nix; + platypus = callBionix ./tools/platypus.nix; + ref = callBionix ./references.nix; + samtools = callBionix ./tools/samtools.nix; + strelka = callBionix ./tools/strelka.nix; + }); +in bionix |