cleanup examples and stray files

1 files changed, 0 insertions, 26 deletions

diff --git a/examples/tnpair.nix b/examples/tnpair.nix
deleted file mode 100644
index 2939db4..0000000
--- a/examples/tnpair.nix
+++ /dev/null
@@ -1,26 +0,0 @@
-# This is an example tumour-normal calling pipeline using strelka
-{ bionix ? import <bionix> {}
-, normal
-, tumour
-, ref
-}:
-
-with bionix;
-with lib;
-
-let
-  input = mapAttrs (_: fetchFastQGZ);
-
-  preprocess = pipe [
-    input
-    (bwa.align { ref = fetchFastA ref; })
-    (samtools.fixmate {})
-    (samtools.sort {})
-    (samtools.markdup {})
-  ];
-
-in linkDrv [
-  (ln (strelka.call {} {normal = preprocess normal; tumour = preprocess tumour;}) "strelka")
-  (ln (preprocess normal) "normal.bam")
-  (ln (preprocess tumour) "tumour.bam")
-]