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authorJustin Bedo <cu@cua0.org>2018-10-25 08:02:20 +1100
committerJustin Bedo <cu@cua0.org>2018-10-25 08:02:20 +1100
commit99ee99c490cc109b78986181ee1be4ce1cd0c0ed (patch)
treec909b5e3d151b6542b243c261593ad4a223132f2 /lib
parent92b4ea2ddac572f8bd830858132956829d92a734 (diff)
Improve type safety of samtools-merge
Diffstat (limited to 'lib')
-rw-r--r--lib/types.nix3
1 files changed, 2 insertions, 1 deletions
diff --git a/lib/types.nix b/lib/types.nix
index 2e5adca..4dbc6ff 100644
--- a/lib/types.nix
+++ b/lib/types.nix
@@ -38,7 +38,8 @@ rec {
toBam = matchFiletype "bam2cram" { bam = filetype.bam; sam = filetype.bam; cram = filetype.bam; };
toSam = matchFiletype "bam2cram" { bam = filetype.sam; sam = filetype.sam; cram = filetype.sam; };
- matchSorting = sym: y: let f = x: match x.sorting (defError (idst sym) y sort); in matchFiletype sym { bam = f; sam = f; cram = f; };
+ matchSorting = sym: y: x: match x.sorting (defError (idst sym) y sort);
+ matchFileSorting = sym: y: let f = matchSorting sym y; in matchFiletype sym { bam = f; sam = f; cram = f; };
sort = make-type "sort" {
none = {};
coord = {};