diff options
| author | Justin Bedo <cu@cua0.org> | 2019-07-05 11:42:24 +1000 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2019-07-08 15:07:29 +1000 |
| commit | aec42a9c27228fd1b2446c2c87e43c6d3fbebc65 (patch) | |
| tree | cd489c17f909dc823751207147fe07491e2b434d /lib | |
| parent | be187bfeb074e5c2b65f25f3dcdb82a98b15570d (diff) | |
ensembl: abstract version
Diffstat (limited to 'lib')
| -rw-r--r-- | lib/references.nix | 17 |
1 files changed, 8 insertions, 9 deletions
diff --git a/lib/references.nix b/lib/references.nix index 271cba3..9cb26a1 100644 --- a/lib/references.nix +++ b/lib/references.nix @@ -46,10 +46,9 @@ rec { ''; passthru.filetype = filetype.vcf { ref = seq; }; }; - ensembl = { - cdna = stage rec { + ensembl = let version = "94"; in { + cdna = stage { name = "ensembl-grch38-cdna-${version}"; - version = "94"; src = pkgs.fetchurl { url = "ftp://ftp.ensembl.org/pub/release-${version}/fasta/homo_sapiens/cdna/Homo_sapiens.GRCh38.cdna.all.fa.gz"; sha256 = "1fc5d6p2wlwsm49wnmxmm3byjx5jvr6z9fpzrq7v7fpb086adl0h"; @@ -57,9 +56,8 @@ rec { buildCommand = "gunzip < $src > $out"; passthru.filetype = filetype.fa {}; }; - ncrna = stage rec { + ncrna = stage { name = "ensembl-grch38-ncrna-${version}"; - version = "94"; src = pkgs.fetchurl { url = "ftp://ftp.ensembl.org/pub/release-${version}/fasta/homo_sapiens/ncrna/Homo_sapiens.GRCh38.ncrna.fa.gz"; sha256 = "1cpasykwriila52nqgvw6d3mjyh6d9qi613hvhn4h1dxkqzgnjff"; @@ -116,10 +114,11 @@ rec { buildCommand = "gunzip < $src > $out"; passthru.filetype = filetype.fa {}; }; - ensembl = { - cdna = stage rec { + ensembl = let + version = "94"; + in { + cdna = stage { name = "ensembl-grcm38-cdna-${version}"; - version = "94"; src = pkgs.fetchurl { url = "ftp://ftp.ensembl.org/pub/release-${version}/fasta/mus_musculus/cdna/Mus_musculus.GRCm38.cdna.all.fa.gz"; sha256 = "0khp9l6s35lav2xqp7vkk6ybnz4wjihn7lapjf2lbpnbzjb4hp6d"; @@ -127,7 +126,7 @@ rec { buildCommand = "gunzip < $src > $out"; passthru.filetype = filetype.fa {}; }; - ncrna = stage rec { + ncrna = stage { name = "ensembl-grcm38-ncrna-${version}"; version = "94"; src = pkgs.fetchurl { |