first draft

1 files changed, 3784 insertions, 0 deletions

diff --git a/sfrc01042-gridss.svg b/sfrc01042-gridss.svg
new file mode 100644
index 0000000..8202d01
--- /dev/null
+++ b/sfrc01042-gridss.svg
@@ -0,0 +1,3784 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<svg
+   xmlns:dc="http://purl.org/dc/elements/1.1/"
+   xmlns:cc="http://creativecommons.org/ns#"
+   xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+   xmlns:svg="http://www.w3.org/2000/svg"
+   xmlns="http://www.w3.org/2000/svg"
+   xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd"
+   xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape"
+   width="1351.8167mm"
+   height="343.25281mm"
+   viewBox="0 0 1351.8167 343.25281"
+   version="1.1"
+   id="svg34869"
+   inkscape:version="1.0.1 (3bc2e813f5, 2020-09-07)"
+   sodipodi:docname="sfrc01042-gridss.svg">
+  <defs
+     id="defs34863" />
+  <sodipodi:namedview
+     id="base"
+     pagecolor="#ffffff"
+     bordercolor="#666666"
+     borderopacity="1.0"
+     inkscape:pageopacity="0.0"
+     inkscape:pageshadow="2"
+     inkscape:zoom="0.56662178"
+     inkscape:cx="2554.6141"
+     inkscape:cy="648.66672"
+     inkscape:document-units="mm"
+     inkscape:current-layer="layer1"
+     inkscape:document-rotation="0"
+     showgrid="false"
+     fit-margin-top="0"
+     fit-margin-left="0"
+     fit-margin-right="0"
+     fit-margin-bottom="0"
+     inkscape:window-width="3440"
+     inkscape:window-height="1440"
+     inkscape:window-x="0"
+     inkscape:window-y="0"
+     inkscape:window-maximized="1" />
+  <metadata
+     id="metadata34866">
+    <rdf:RDF>
+      <cc:Work
+         rdf:about="">
+        <dc:format>image/svg+xml</dc:format>
+        <dc:type
+           rdf:resource="http://purl.org/dc/dcmitype/StillImage" />
+        <dc:title></dc:title>
+      </cc:Work>
+    </rdf:RDF>
+  </metadata>
+  <g
+     inkscape:label="Layer 1"
+     inkscape:groupmode="layer"
+     id="layer1"
+     transform="translate(663.05716,29.507354)">
+    <g
+       id="node5"
+       class="node"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title24832">cmi8n2kwcyf5zjf4jcjrk1qan7c7qk54-bionix-samtools-sort.drv</title>
+      <polygon
+         fill="#ff0000"
+         stroke="#000000"
+         points="13806.03,-396 13620.03,-396 13620.03,-360 13806.03,-360 "
+         id="polygon24834" />
+      <text
+         text-anchor="middle"
+         x="13713.03"
+         y="-374.29999"
+         font-family="Times-Roman"
+         font-size="14px"
+         id="text24836">bionix-samtools-sort.drv</text>
+    </g>
+    <g
+       id="node6"
+       class="node"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title24846">cqcqfwy7hg64z88ali8i51yqh4iqv5wh-bionix-gridss-annotateVariants.drv</title>
+      <polygon
+         fill="#ff0000"
+         stroke="#000000"
+         points="13295.53,-180 13038.53,-180 13038.53,-144 13295.53,-144 "
+         id="polygon24848" />
+      <text
+         text-anchor="middle"
+         x="13167.03"
+         y="-158.3"
+         font-family="Times-Roman"
+         font-size="14px"
+         id="text24850">bionix-gridss-annotateVariants.drv</text>
+    </g>
+    <g
+       id="edge196"
+       class="edge"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title24853">cmi8n2kwcyf5zjf4jcjrk1qan7c7qk54-bionix-samtools-sort.drv-&gt;cqcqfwy7hg64z88ali8i51yqh4iqv5wh-bionix-gridss-annotateVariants.drv</title>
+      <path
+         fill="none"
+         stroke="#008000"
+         d="m 13732.19,-359.99 c 18.98,18.92 42.82,49.73 24.84,71.99 -55.62,68.84 -295.03,101.27 -451.26,115.36"
+         id="path24855" />
+      <polygon
+         fill="#008000"
+         stroke="#008000"
+         points="13305.25,-176.11 13305.87,-169.14 13295.6,-171.74 "
+         id="polygon24857" />
+    </g>
+    <g
+       id="node77"
+       class="node"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title24860">7m2md5fnmcdsg3zaplz78aqi7wxrk60g-bionix-gridss-identifyVariants.drv</title>
+      <polygon
+         fill="#ff0000"
+         stroke="#000000"
+         points="12866.03,-252 12618.03,-252 12618.03,-216 12866.03,-216 "
+         id="polygon24862" />
+      <text
+         text-anchor="middle"
+         x="12742.03"
+         y="-230.3"
+         font-family="Times-Roman"
+         font-size="14px"
+         id="text24864">bionix-gridss-identifyVariants.drv</text>
+    </g>
+    <g
+       id="edge210"
+       class="edge"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title24867">cmi8n2kwcyf5zjf4jcjrk1qan7c7qk54-bionix-samtools-sort.drv-&gt;7m2md5fnmcdsg3zaplz78aqi7wxrk60g-bionix-gridss-identifyVariants.drv</title>
+      <path
+         fill="none"
+         stroke="#deb887"
+         d="m 13619.83,-366.44 c -86,10.01 -217.2,25.92 -330.8,42.44 -96.75,14.07 -120.52,20.25 -217,36 -70.67,11.54 -149.88,24.27 -212.99,34.36"
+         id="path24869" />
+      <polygon
+         fill="#deb887"
+         stroke="#deb887"
+         points="12858.38,-257.08 12859.48,-250.17 12849.06,-252.05 "
+         id="polygon24871" />
+    </g>
+    <g
+       id="node78"
+       class="node"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title24874">iss5z12ifpydd2lnxzvxl70nqlg3imwm-bionix-samtools-index.drv</title>
+      <polygon
+         fill="#ff0000"
+         stroke="#000000"
+         points="13747.53,-324 13550.53,-324 13550.53,-288 13747.53,-288 "
+         id="polygon24876" />
+      <text
+         text-anchor="middle"
+         x="13649.03"
+         y="-302.29999"
+         font-family="Times-Roman"
+         font-size="14px"
+         id="text24878">bionix-samtools-index.drv</text>
+    </g>
+    <g
+       id="edge316"
+       class="edge"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title24881">cmi8n2kwcyf5zjf4jcjrk1qan7c7qk54-bionix-samtools-sort.drv-&gt;iss5z12ifpydd2lnxzvxl70nqlg3imwm-bionix-samtools-index.drv</title>
+      <path
+         fill="none"
+         stroke="#0000ff"
+         d="m 13697.21,-359.7 c -7.75,8.48 -17.22,18.84 -25.71,28.12"
+         id="path24883" />
+      <polygon
+         fill="#0000ff"
+         stroke="#0000ff"
+         points="13668.83,-333.85 13674,-329.12 13664.67,-324.1 "
+         id="polygon24885" />
+    </g>
+    <g
+       id="node79"
+       class="node"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title24888">k038yp2ns7gr62zcas06gr4qwlvz1ja9-bionix-gridss-collectMetrics.drv</title>
+      <polygon
+         fill="#ff0000"
+         stroke="#000000"
+         points="13532.03,-324 13298.03,-324 13298.03,-288 13532.03,-288 "
+         id="polygon24890" />
+      <text
+         text-anchor="middle"
+         x="13415.03"
+         y="-302.29999"
+         font-family="Times-Roman"
+         font-size="14px"
+         id="text24892">bionix-gridss-collectMetrics.drv</text>
+    </g>
+    <g
+       id="edge343"
+       class="edge"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title24895">cmi8n2kwcyf5zjf4jcjrk1qan7c7qk54-bionix-samtools-sort.drv-&gt;k038yp2ns7gr62zcas06gr4qwlvz1ja9-bionix-gridss-collectMetrics.drv</title>
+      <path
+         fill="none"
+         stroke="#008000"
+         d="m 13640.51,-359.97 c -43.17,10.14 -98.08,23.04 -142.91,33.57"
+         id="path24897" />
+      <polygon
+         fill="#008000"
+         stroke="#008000"
+         points="13496.55,-329.74 13498.15,-322.93 13487.61,-324.05 "
+         id="polygon24899" />
+    </g>
+    <g
+       id="node147"
+       class="node"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title25728">vzq8qp1jkb90nn3srx7qmj8rfm65zb5g-bionix-gridss-extractSVReads.drv</title>
+      <polygon
+         fill="#ff0000"
+         stroke="#000000"
+         points="15193.53,-1044 14944.53,-1044 14944.53,-1008 15193.53,-1008 "
+         id="polygon25730" />
+      <text
+         text-anchor="middle"
+         x="15069.03"
+         y="-1022.3"
+         font-family="Times-Roman"
+         font-size="14px"
+         id="text25732">bionix-gridss-extractSVReads.drv</text>
+    </g>
+    <g
+       id="node186"
+       class="node"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title25756">jl1hqccsrxmr2gz8sw6kfj7y71yigrlg-bionix-gridss-collectMetrics.drv</title>
+      <polygon
+         fill="#ff0000"
+         stroke="#000000"
+         points="15041.03,-1116 14807.03,-1116 14807.03,-1080 15041.03,-1080 "
+         id="polygon25758" />
+      <text
+         text-anchor="middle"
+         x="14924.03"
+         y="-1094.3"
+         font-family="Times-Roman"
+         font-size="14px"
+         id="text25760">bionix-gridss-collectMetrics.drv</text>
+    </g>
+    <g
+       id="node198"
+       class="node"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title26015">s92xv75j52snxjpyld2f2pd9lylnqqrn-bionix-gridss-extractSVReads.drv</title>
+      <polygon
+         fill="#ff0000"
+         stroke="#000000"
+         points="14926.53,-1044 14677.53,-1044 14677.53,-1008 14926.53,-1008 "
+         id="polygon26017" />
+      <text
+         text-anchor="middle"
+         x="14802.03"
+         y="-1022.3"
+         font-family="Times-Roman"
+         font-size="14px"
+         id="text26019">bionix-gridss-extractSVReads.drv</text>
+    </g>
+    <g
+       id="node199"
+       class="node"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title26029">grsy3dpm1hzzlaxfz5qs8i0i1awsw87p-bionix-gridss-collectMetrics.drv</title>
+      <polygon
+         fill="#ff0000"
+         stroke="#000000"
+         points="13814.03,-1116 13580.03,-1116 13580.03,-1080 13814.03,-1080 "
+         id="polygon26031" />
+      <text
+         text-anchor="middle"
+         x="13697.03"
+         y="-1094.3"
+         font-family="Times-Roman"
+         font-size="14px"
+         id="text26033">bionix-gridss-collectMetrics.drv</text>
+    </g>
+    <g
+       id="node202"
+       class="node"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title26260">zyp4qhcfrcp3hncccy4qm2zc0dx9c7xp-bionix-gridss-extractSVReads.drv</title>
+      <polygon
+         fill="#ff0000"
+         stroke="#000000"
+         points="15460.53,-1044 15211.53,-1044 15211.53,-1008 15460.53,-1008 "
+         id="polygon26262" />
+      <text
+         text-anchor="middle"
+         x="15336.03"
+         y="-1022.3"
+         font-family="Times-Roman"
+         font-size="14px"
+         id="text26264">bionix-gridss-extractSVReads.drv</text>
+    </g>
+    <g
+       id="node211"
+       class="node"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title26274">fi9mw3jshd5mhd2i2n12x91c9nplwqpq-bionix-gridss-collectMetrics.drv</title>
+      <polygon
+         fill="#ff0000"
+         stroke="#000000"
+         points="15331.03,-1116 15097.03,-1116 15097.03,-1080 15331.03,-1080 "
+         id="polygon26276" />
+      <text
+         text-anchor="middle"
+         x="15214.03"
+         y="-1094.3"
+         font-family="Times-Roman"
+         font-size="14px"
+         id="text26278">bionix-gridss-collectMetrics.drv</text>
+    </g>
+    <g
+       id="node48"
+       class="node"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title26470">bh9np1j6vxal6ahjsp4jrbjp7kgwl6az-bionix-gridss-softClipsToSplitReads.drv</title>
+      <polygon
+         fill="#ff0000"
+         stroke="#000000"
+         points="14503.03,-468 14217.03,-468 14217.03,-432 14503.03,-432 "
+         id="polygon26472" />
+      <text
+         text-anchor="middle"
+         x="14360.03"
+         y="-446.29999"
+         font-family="Times-Roman"
+         font-size="14px"
+         id="text26474">bionix-gridss-softClipsToSplitReads.drv</text>
+    </g>
+    <g
+       id="node49"
+       class="node"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title26484">42y10r3hb6nh803vfaq04ak7k4jyqxvv-bionix-gridss-assemble.drv</title>
+      <polygon
+         fill="#ff0000"
+         stroke="#000000"
+         points="13137.03,-540 12931.03,-540 12931.03,-504 13137.03,-504 "
+         id="polygon26486" />
+      <text
+         text-anchor="middle"
+         x="13034.03"
+         y="-518.29999"
+         font-family="Times-Roman"
+         font-size="14px"
+         id="text26488">bionix-gridss-assemble.drv</text>
+    </g>
+    <g
+       id="node55"
+       class="node"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title26498">brabadaz6f8zfrjgkx228svfw4hnj6jh-bionix-gridss-assemble.drv</title>
+      <polygon
+         fill="#ff0000"
+         stroke="#000000"
+         points="13690.03,-612 13484.03,-612 13484.03,-576 13690.03,-576 "
+         id="polygon26500" />
+      <text
+         text-anchor="middle"
+         x="13587.03"
+         y="-590.29999"
+         font-family="Times-Roman"
+         font-size="14px"
+         id="text26502">bionix-gridss-assemble.drv</text>
+    </g>
+    <g
+       id="node56"
+       class="node"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title26512">c0yc7d0as8qgkhnirpw4n86zw3jn3zvj-bionix-gridss-assemble.drv</title>
+      <polygon
+         fill="#ff0000"
+         stroke="#000000"
+         points="13914.03,-612 13708.03,-612 13708.03,-576 13914.03,-576 "
+         id="polygon26514" />
+      <text
+         text-anchor="middle"
+         x="13811.03"
+         y="-590.29999"
+         font-family="Times-Roman"
+         font-size="14px"
+         id="text26516">bionix-gridss-assemble.drv</text>
+    </g>
+    <g
+       id="node57"
+       class="node"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title26526">caisv3z5hf72vrayb5j0zp07v8kyanas-bionix-gridss-assemble.drv</title>
+      <polygon
+         fill="#ff0000"
+         stroke="#000000"
+         points="14400.03,-612 14194.03,-612 14194.03,-576 14400.03,-576 "
+         id="polygon26528" />
+      <text
+         text-anchor="middle"
+         x="14297.03"
+         y="-590.29999"
+         font-family="Times-Roman"
+         font-size="14px"
+         id="text26530">bionix-gridss-assemble.drv</text>
+    </g>
+    <g
+       id="node59"
+       class="node"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title26540">nd460p996p6v0lm3jnvk8a1hlhjygxsc-bionix-gridss-assemble.drv</title>
+      <polygon
+         fill="#ff0000"
+         stroke="#000000"
+         points="12676.03,-612 12470.03,-612 12470.03,-576 12676.03,-576 "
+         id="polygon26542" />
+      <text
+         text-anchor="middle"
+         x="12573.03"
+         y="-590.29999"
+         font-family="Times-Roman"
+         font-size="14px"
+         id="text26544">bionix-gridss-assemble.drv</text>
+    </g>
+    <g
+       id="node60"
+       class="node"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title26554">np0lh34kfvwxypwmxmd9j6k8ldm44dkx-bionix-gridss-assemble.drv</title>
+      <polygon
+         fill="#ff0000"
+         stroke="#000000"
+         points="14176.03,-612 13970.03,-612 13970.03,-576 14176.03,-576 "
+         id="polygon26556" />
+      <text
+         text-anchor="middle"
+         x="14073.03"
+         y="-590.29999"
+         font-family="Times-Roman"
+         font-size="14px"
+         id="text26558">bionix-gridss-assemble.drv</text>
+    </g>
+    <g
+       id="node61"
+       class="node"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title26568">p8m8pc06szjjq1ly906143h0vl72bn5s-bionix-gridss-assemble.drv</title>
+      <polygon
+         fill="#ff0000"
+         stroke="#000000"
+         points="12076.03,-612 11870.03,-612 11870.03,-576 12076.03,-576 "
+         id="polygon26570" />
+      <text
+         text-anchor="middle"
+         x="11973.03"
+         y="-590.29999"
+         font-family="Times-Roman"
+         font-size="14px"
+         id="text26572">bionix-gridss-assemble.drv</text>
+    </g>
+    <g
+       id="node64"
+       class="node"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title26582">sp67rf4k6yasbzkjlj5bmn04mg2h6nqk-bionix-gridss-assemble.drv</title>
+      <polygon
+         fill="#ff0000"
+         stroke="#000000"
+         points="12300.03,-612 12094.03,-612 12094.03,-576 12300.03,-576 "
+         id="polygon26584" />
+      <text
+         text-anchor="middle"
+         x="12197.03"
+         y="-590.29999"
+         font-family="Times-Roman"
+         font-size="14px"
+         id="text26586">bionix-gridss-assemble.drv</text>
+    </g>
+    <g
+       id="node66"
+       class="node"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title26596">wk412bp4fx3svh9ngnyy4ihl3785ykql-bionix-gridss-assemble.drv</title>
+      <polygon
+         fill="#ff0000"
+         stroke="#000000"
+         points="13128.03,-612 12922.03,-612 12922.03,-576 13128.03,-576 "
+         id="polygon26598" />
+      <text
+         text-anchor="middle"
+         x="13025.03"
+         y="-590.29999"
+         font-family="Times-Roman"
+         font-size="14px"
+         id="text26600">bionix-gridss-assemble.drv</text>
+    </g>
+    <g
+       id="node67"
+       class="node"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title26610">wxcbyhv47la2ri8c8yl7hybavchsilvv-bionix-gridss-assemble.drv</title>
+      <polygon
+         fill="#ff0000"
+         stroke="#000000"
+         points="13466.03,-612 13260.03,-612 13260.03,-576 13466.03,-576 "
+         id="polygon26612" />
+      <text
+         text-anchor="middle"
+         x="13363.03"
+         y="-590.29999"
+         font-family="Times-Roman"
+         font-size="14px"
+         id="text26614">bionix-gridss-assemble.drv</text>
+    </g>
+    <g
+       id="node68"
+       class="node"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title26624">ynxzqvn3zb843lf2jw96qkqgx8d8kn4x-bionix-gridss-assemble.drv</title>
+      <polygon
+         fill="#ff0000"
+         stroke="#000000"
+         points="11852.03,-612 11646.03,-612 11646.03,-576 11852.03,-576 "
+         id="polygon26626" />
+      <text
+         text-anchor="middle"
+         x="11749.03"
+         y="-590.29999"
+         font-family="Times-Roman"
+         font-size="14px"
+         id="text26628">bionix-gridss-assemble.drv</text>
+    </g>
+    <g
+       id="node70"
+       class="node"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title26638">53xd9b2xyjxj2ik93zgrxkxk1b6wndln-bionix-gridss-softClipsToSplitReads.drv</title>
+      <polygon
+         fill="#ff0000"
+         stroke="#000000"
+         points="14322.03,-828 14036.03,-828 14036.03,-792 14322.03,-792 "
+         id="polygon26640" />
+      <text
+         text-anchor="middle"
+         x="14179.03"
+         y="-806.29999"
+         font-family="Times-Roman"
+         font-size="14px"
+         id="text26642">bionix-gridss-softClipsToSplitReads.drv</text>
+    </g>
+    <g
+       id="node71"
+       class="node"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title26652">xsv0y5flv8bp1z5im447i67mv3p81bn0-bionix-gridss-computeSamTags.drv</title>
+      <polygon
+         fill="#ff0000"
+         stroke="#000000"
+         points="14317.03,-900 14055.03,-900 14055.03,-864 14317.03,-864 "
+         id="polygon26654" />
+      <text
+         text-anchor="middle"
+         x="14186.03"
+         y="-878.29999"
+         font-family="Times-Roman"
+         font-size="14px"
+         id="text26656">bionix-gridss-computeSamTags.drv</text>
+    </g>
+    <g
+       id="node72"
+       class="node"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title26666">0r0i1lxn79h81q9i6mak7i4f2kawzhwh-bionix-gridss-softClipsToSplitReads.drv</title>
+      <polygon
+         fill="#ff0000"
+         stroke="#000000"
+         points="11991.03,-828 11705.03,-828 11705.03,-792 11991.03,-792 "
+         id="polygon26668" />
+      <text
+         text-anchor="middle"
+         x="11848.03"
+         y="-806.29999"
+         font-family="Times-Roman"
+         font-size="14px"
+         id="text26670">bionix-gridss-softClipsToSplitReads.drv</text>
+    </g>
+    <g
+       id="node73"
+       class="node"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title26680">mrsn3j0qigkdlpi0165k9fb7d4s0wjcw-bionix-gridss-computeSamTags.drv</title>
+      <polygon
+         fill="#ff0000"
+         stroke="#000000"
+         points="11978.03,-900 11716.03,-900 11716.03,-864 11978.03,-864 "
+         id="polygon26682" />
+      <text
+         text-anchor="middle"
+         x="11847.03"
+         y="-878.29999"
+         font-family="Times-Roman"
+         font-size="14px"
+         id="text26684">bionix-gridss-computeSamTags.drv</text>
+    </g>
+    <g
+       id="node80"
+       class="node"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title26701">7rdsnawznds124ylj603x2r55fgwxdsv-bionix-gridss-softClipsToSplitReads.drv</title>
+      <polygon
+         fill="#ff0000"
+         stroke="#000000"
+         points="12315.03,-828 12029.03,-828 12029.03,-792 12315.03,-792 "
+         id="polygon26703" />
+      <text
+         text-anchor="middle"
+         x="12172.03"
+         y="-806.29999"
+         font-family="Times-Roman"
+         font-size="14px"
+         id="text26705">bionix-gridss-softClipsToSplitReads.drv</text>
+    </g>
+    <g
+       id="node81"
+       class="node"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title26715">y79v3klyb5n2vx00z2c6mg14q3b87i02-bionix-gridss-computeSamTags.drv</title>
+      <polygon
+         fill="#ff0000"
+         stroke="#000000"
+         points="12258.03,-900 11996.03,-900 11996.03,-864 12258.03,-864 "
+         id="polygon26717" />
+      <text
+         text-anchor="middle"
+         x="12127.03"
+         y="-878.29999"
+         font-family="Times-Roman"
+         font-size="14px"
+         id="text26719">bionix-gridss-computeSamTags.drv</text>
+    </g>
+    <g
+       id="edge120"
+       class="edge"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title27324">bh9np1j6vxal6ahjsp4jrbjp7kgwl6az-bionix-gridss-softClipsToSplitReads.drv-&gt;cmi8n2kwcyf5zjf4jcjrk1qan7c7qk54-bionix-samtools-sort.drv</title>
+      <path
+         fill="none"
+         stroke="#ff00ff"
+         d="m 14216.84,-433.51 c -121.28,13.12 -292.23,31.62 -400.52,43.33"
+         id="path27326" />
+      <polygon
+         fill="#ff00ff"
+         stroke="#ff00ff"
+         points="13815.93,-393.65 13816.68,-386.69 13806.36,-389.1 "
+         id="polygon27328" />
+    </g>
+    <g
+       id="edge121"
+       class="edge"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title27331">42y10r3hb6nh803vfaq04ak7k4jyqxvv-bionix-gridss-assemble.drv-&gt;bh9np1j6vxal6ahjsp4jrbjp7kgwl6az-bionix-gridss-softClipsToSplitReads.drv</title>
+      <path
+         fill="none"
+         stroke="#ff0000"
+         d="m 13137.25,-515.55 c 232.21,12.26 796.69,42.06 1069.78,56.47"
+         id="path27333" />
+      <polygon
+         fill="#ff0000"
+         stroke="#ff0000"
+         points="14206.85,-455.58 14207.22,-462.57 14217.02,-458.55 "
+         id="polygon27335" />
+    </g>
+    <g
+       id="node50"
+       class="node"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title27338">k875rakfyv0zrkwfdzm53dnjbdg1dgp7-bionix-bwa-index.drv</title>
+      <polygon
+         fill="#ff0000"
+         stroke="#000000"
+         points="13655.03,-972 13491.03,-972 13491.03,-936 13655.03,-936 "
+         id="polygon27340" />
+      <text
+         text-anchor="middle"
+         x="13573.03"
+         y="-950.29999"
+         font-family="Times-Roman"
+         font-size="14px"
+         id="text27342">bionix-bwa-index.drv</text>
+    </g>
+    <g
+       id="edge200"
+       class="edge"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title27345">k875rakfyv0zrkwfdzm53dnjbdg1dgp7-bionix-bwa-index.drv-&gt;cqcqfwy7hg64z88ali8i51yqh4iqv5wh-bionix-gridss-annotateVariants.drv</title>
+      <path
+         fill="none"
+         stroke="#000000"
+         d="m 13655.45,-936.84 c 1.54,0.28 3.06,0.56 4.58,0.84 93.58,17.12 122.91,0.07 211,36 39.04,15.92 117.33,91.2 156,108 180.62,78.46 864,0.07 864,197 0,0 0,0 0,290 0,24.71 29.93,39.48 -402,89 -225.74,25.88 -892.13,43.41 -1183.26,50.04"
+         id="path27347" />
+      <polygon
+         fill="#000000"
+         stroke="#000000"
+         points="13305.49,-169.45 13305.65,-162.45 13295.57,-165.73 "
+         id="polygon27349" />
+    </g>
+    <g
+       id="edge122"
+       class="edge"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title27352">k875rakfyv0zrkwfdzm53dnjbdg1dgp7-bionix-bwa-index.drv-&gt;bh9np1j6vxal6ahjsp4jrbjp7kgwl6az-bionix-gridss-softClipsToSplitReads.drv</title>
+      <path
+         fill="none"
+         stroke="#ff0000"
+         d="m 13655.31,-936.72 c 71.4,14.25 164.61,33.22 172.72,36.72 51.28,22.14 57.44,39.68 103,72 22.33,15.84 25.27,24.23 50,36 55.29,26.32 74.68,17.33 133,36 87.59,28.04 110.07,34.4 194,72 62.41,27.96 100.72,13.41 136,72 28.5,47.33 -21.39,105.31 -55.69,137.18"
+         id="path27354" />
+      <polygon
+         fill="#ff0000"
+         stroke="#ff0000"
+         points="14385.93,-477.36 14390.62,-472.17 14380.86,-468.06 "
+         id="polygon27356" />
+    </g>
+    <g
+       id="edge160"
+       class="edge"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title27366">k875rakfyv0zrkwfdzm53dnjbdg1dgp7-bionix-bwa-index.drv-&gt;brabadaz6f8zfrjgkx228svfw4hnj6jh-bionix-gridss-assemble.drv</title>
+      <path
+         fill="none"
+         stroke="#deb887"
+         d="m 13599.88,-935.89 c 52.97,33.83 174.51,111.92 275.15,179.89 54.96,37.13 146.8,58.19 103,108 -39.43,44.84 -201.57,28.94 -277.72,36.09"
+         id="path27368" />
+      <polygon
+         fill="#deb887"
+         stroke="#deb887"
+         points="13699.69,-615.36 13700.49,-608.41 13690.15,-610.74 "
+         id="polygon27370" />
+    </g>
+    <g
+       id="edge171"
+       class="edge"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title27373">k875rakfyv0zrkwfdzm53dnjbdg1dgp7-bionix-bwa-index.drv-&gt;c0yc7d0as8qgkhnirpw4n86zw3jn3zvj-bionix-gridss-assemble.drv</title>
+      <path
+         fill="none"
+         stroke="#0000ff"
+         d="m 13618.42,-935.89 c 24.1,9.61 53.96,22.38 79.61,35.89 78.86,41.54 91.35,64.22 169,108 94.53,53.3 161.69,15.84 219,108 8.45,13.59 10.19,23.66 0,36 -10.76,13.03 -90.87,27.53 -161.87,38.06"
+         id="path27375" />
+      <polygon
+         fill="#0000ff"
+         stroke="#0000ff"
+         points="13923.6,-613.39 13924.61,-606.47 13914.21,-608.48 "
+         id="polygon27377" />
+    </g>
+    <g
+       id="edge182"
+       class="edge"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title27380">k875rakfyv0zrkwfdzm53dnjbdg1dgp7-bionix-bwa-index.drv-&gt;caisv3z5hf72vrayb5j0zp07v8kyanas-bionix-gridss-assemble.drv</title>
+      <path
+         fill="none"
+         stroke="#008000"
+         d="m 13653.29,-935.96 c 49.59,11.12 108.12,25.45 131.74,35.96 52.37,23.3 59.8,39.47 107,72 22.84,15.75 25.97,24.02 51,36 52.53,25.15 73.47,10.85 126,36 79.08,37.87 160.27,102.63 201.08,137.36"
+         id="path27382" />
+      <polygon
+         fill="#008000"
+         stroke="#008000"
+         points="14267.86,-615.97 14272.41,-621.28 14277.73,-612.11 "
+         id="polygon27384" />
+    </g>
+    <g
+       id="edge408"
+       class="edge"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title27387">k875rakfyv0zrkwfdzm53dnjbdg1dgp7-bionix-bwa-index.drv-&gt;nd460p996p6v0lm3jnvk8a1hlhjygxsc-bionix-gridss-assemble.drv</title>
+      <path
+         fill="none"
+         stroke="#deb887"
+         d="m 13490.7,-937.53 c -2.92,0.52 -5.82,1.03 -8.67,1.53 -97.59,17.1 -122.91,16.26 -220,36 -334.91,68.1 -557.14,-73.98 -738,216 -13.32,21.35 3.42,46.53 20.85,64.65"
+         id="path27389" />
+      <polygon
+         fill="#deb887"
+         stroke="#deb887"
+         points="12542.72,-616.56 12547.63,-621.55 12552.3,-612.04 "
+         id="polygon27391" />
+    </g>
+    <g
+       id="edge425"
+       class="edge"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title27394">k875rakfyv0zrkwfdzm53dnjbdg1dgp7-bionix-bwa-index.drv-&gt;np0lh34kfvwxypwmxmd9j6k8ldm44dkx-bionix-gridss-assemble.drv</title>
+      <path
+         fill="none"
+         stroke="#ff0000"
+         d="m 13641.64,-935.89 c 31.09,8.89 67.85,21.02 99.39,35.89 53.19,25.07 62.01,39.48 111,72 23.72,15.75 27.23,23.88 53,36 51.93,24.42 74.3,7.3 124,36 40.01,23.11 56.88,29.49 75,72 8.85,20.76 -0.84,44.99 -11.66,62.93"
+         id="path27396" />
+      <polygon
+         fill="#ff0000"
+         stroke="#ff0000"
+         points="14089.2,-622.62 14095.08,-618.81 14086.7,-612.32 "
+         id="polygon27398" />
+    </g>
+    <g
+       id="edge436"
+       class="edge"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title27401">k875rakfyv0zrkwfdzm53dnjbdg1dgp7-bionix-bwa-index.drv-&gt;p8m8pc06szjjq1ly906143h0vl72bn5s-bionix-gridss-assemble.drv</title>
+      <path
+         fill="none"
+         stroke="#deb887"
+         d="m 13490.77,-937.09 c -2.95,0.39 -5.87,0.76 -8.74,1.09 -184.08,21.07 -652.48,-5.76 -833,36 -77.95,18.03 -98.29,27.82 -165,72 -19.4,12.85 -16.65,26.77 -38,36 -127.7,55.19 -493.07,-8.13 -625,36 -54.71,18.3 -80.78,21.14 -108,72 -7.55,14.11 -10.12,23.61 0,36 5.11,6.26 82.76,21.59 151.88,34.16"
+         id="path27403" />
+      <polygon
+         fill="#deb887"
+         stroke="#deb887"
+         points="11864.57,-610.35 11865.82,-617.24 11875.04,-612.01 "
+         id="polygon27405" />
+    </g>
+    <g
+       id="edge504"
+       class="edge"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title27408">k875rakfyv0zrkwfdzm53dnjbdg1dgp7-bionix-bwa-index.drv-&gt;sp67rf4k6yasbzkjlj5bmn04mg2h6nqk-bionix-gridss-assemble.drv</title>
+      <path
+         fill="none"
+         stroke="#000000"
+         d="m 13490.76,-937.12 c -2.94,0.41 -5.86,0.78 -8.73,1.12 -321.29,37.79 -410.9,-32.82 -727,36 -126.69,27.58 -144.52,79.49 -271,108 -153.12,34.52 -616.64,-26.22 -698,108 -50.39,83.12 74.75,43.21 297.86,71.9"
+         id="path27410" />
+      <polygon
+         fill="#000000"
+         stroke="#000000"
+         points="12083.54,-608.62 12084.45,-615.56 12093.91,-610.77 "
+         id="polygon27412" />
+    </g>
+    <g
+       id="edge546"
+       class="edge"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title27415">k875rakfyv0zrkwfdzm53dnjbdg1dgp7-bionix-bwa-index.drv-&gt;wk412bp4fx3svh9ngnyy4ihl3785ykql-bionix-gridss-assemble.drv</title>
+      <path
+         fill="none"
+         stroke="#deb887"
+         d="m 13503.58,-935.9 c -115.51,29.43 -334.55,89.86 -334.55,124.9 0,0 0,0 0,74 0,40.97 2.68,57.91 -24,89 -11.89,13.85 -28.1,24.23 -44.75,31.94"
+         id="path27417" />
+      <polygon
+         fill="#deb887"
+         stroke="#deb887"
+         points="13098.78,-619.22 13101.57,-612.8 13091,-612.04 "
+         id="polygon27419" />
+    </g>
+    <g
+       id="edge559"
+       class="edge"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title27422">k875rakfyv0zrkwfdzm53dnjbdg1dgp7-bionix-bwa-index.drv-&gt;wxcbyhv47la2ri8c8yl7hybavchsilvv-bionix-gridss-assemble.drv</title>
+      <path
+         fill="none"
+         stroke="#0000ff"
+         d="m 13573.03,-935.95 c 0,26.66 0,79.84 0,124.95 0,0 0,0 0,74 0,44.13 -10.55,60.23 -44,89 -16.81,14.46 -37.59,24.98 -58.7,32.64"
+         id="path27424" />
+      <polygon
+         fill="#0000ff"
+         stroke="#0000ff"
+         points="13468.95,-618.59 13471.21,-611.97 13460.62,-612.04 "
+         id="polygon27426" />
+    </g>
+    <g
+       id="edge147"
+       class="edge"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title27436">k875rakfyv0zrkwfdzm53dnjbdg1dgp7-bionix-bwa-index.drv-&gt;53xd9b2xyjxj2ik93zgrxkxk1b6wndln-bionix-gridss-softClipsToSplitReads.drv</title>
+      <path
+         fill="none"
+         stroke="#000000"
+         d="m 13655.43,-948.4 c 106.92,6.91 286.97,22.06 347.6,48.4 22.86,9.93 21.6,23.23 43,36 21.57,12.87 46.84,23.84 69.52,32.41"
+         id="path27438" />
+      <polygon
+         fill="#000000"
+         stroke="#000000"
+         points="14114.5,-828.25 14116.92,-834.82 14125.09,-828.07 "
+         id="polygon27440" />
+    </g>
+    <g
+       id="edge587"
+       class="edge"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title27443">k875rakfyv0zrkwfdzm53dnjbdg1dgp7-bionix-bwa-index.drv-&gt;xsv0y5flv8bp1z5im447i67mv3p81bn0-bionix-gridss-computeSamTags.drv</title>
+      <path
+         fill="none"
+         stroke="#ff0000"
+         d="m 13655.04,-943.81 c 93.45,10.49 250.74,28.22 385.99,43.81 1.27,0.15 2.55,0.29 3.84,0.44"
+         id="path27445" />
+      <polygon
+         fill="#ff0000"
+         stroke="#ff0000"
+         points="14044.49,-896.08 14045.3,-903.03 14054.83,-898.41 "
+         id="polygon27447" />
+    </g>
+    <g
+       id="edge151"
+       class="edge"
+       transform="matrix(0.3527778,0,0,0.3527778,-4765.5487,364.36906)">
+      <title
+         id="title27450">k875rakfyv0zrkwfdzm53dnjbdg1dgp7-bionix-bwa-index.drv-&gt;0r0i1lxn79h81q9i6mak7i4f2kawzhwh-bionix-gridss-softClipsToSplitReads.drv</title>
+      <path
+         fill="none"
+         stroke="#ff0000"
+         d="m 13490.77,-937.05 c -2.94,0.39 -5.87,0.74 -8.74,1.05 -130.64,14.11 -1062.55,-18.73 -1182,36 -19.73,9.04 -13.72,26.03 -33,36 -12.09,6.25 -151.23,23.1 -265.9,36.13"
+         id="path27452" />
+      <polygon
+         fill="#ff0000"
+         stroke="#ff0000"
+         points="12000.71,-831.34 12001.