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| author | Justin Bedo <cu@cua0.org> | 2019-04-17 19:06:00 +1000 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2019-04-17 19:06:00 +1000 |
| commit | 0c09091762accf8716ef7853dded34e1c86497aa (patch) | |
| tree | 55c7d1a10659ae31935c81bf8b46000c0af204a4 /test-tnpair.nix | |
| parent | 1996a2de345755b72027481e72ca3c2402bebf8d (diff) | |
snap: init
Diffstat (limited to 'test-tnpair.nix')
| -rw-r--r-- | test-tnpair.nix | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix index 4a3a59e..cd8620a 100644 --- a/test-tnpair.nix +++ b/test-tnpair.nix @@ -50,6 +50,7 @@ let (ln (strelka.variants tnpairResult.glvariants) "strelka.gl.vcf") (ln (bowtie.align {inherit ref;} tnpair.normal.files) "alignments/bowtie-normal.bam") (ln (minimap2.align {inherit ref; preset = "sr"; } tnpair.normal.files) "alignments/minimap2-normal.bam") + (ln (snap.align {inherit ref; } tnpair.normal.files) "alignments/snap-normal.bam") (ln (gridss.callVariants {} (with tnpairResult.alignments; [normal tumour])) "gridss") (ln (gridss.call (with tnpairResult.alignments; [normal tumour])) "gridss2") (ln (gridss.callAndAssemble (with tnpairResult.alignments; [normal tumour])) "gridss3") |