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| author | Justin Bedo <cu@cua0.org> | 2021-12-03 09:42:04 +1100 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2021-12-03 09:42:04 +1100 |
| commit | 32c842e7c5fe1038cec73da3e07ba12df6295549 (patch) | |
| tree | 2418ebb61d450fe4c11be3659afb22156ab52a1b /test-tnpair.nix | |
| parent | 7e9f9d84efbfa3ddcd1b41f410adc53daca3f405 (diff) | |
genmap: init
Diffstat (limited to 'test-tnpair.nix')
| -rw-r--r-- | test-tnpair.nix | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix index 9ba0e51..0960b6f 100644 --- a/test-tnpair.nix +++ b/test-tnpair.nix @@ -95,6 +95,7 @@ let snver = snver.call { ploidy = 1; } tnpairResult.alignments; mosdepth = mosdepth.plot { } { inputs = mapAttrsToList (_: mosdepth.depth { }) tnpairResult.alignments; names = [ "seq1" "seq2" ]; }; xenomapper = xenomapper.allocate { } { primary = nameSort tnpairResult.alignments.tumour; secondary = nameSort tnpairResult.alignments.tumour; }; + genmap = genmap.calcmap { } ref; inherit alignments; }; |