diff options
| author | Justin Bedo <cu@cua0.org> | 2019-08-15 14:27:06 +1000 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2019-08-15 14:27:06 +1000 |
| commit | 3e037c4d706f5ac02c663a8d7f56703373785d29 (patch) | |
| tree | a36051c85099dc0dfa46c60b7cedb97db5c554e6 /test-tnpair.nix | |
| parent | 2117e14fe6bcef6de715974b0e34a77429b4148a (diff) | |
SNVer: init 0.5.3
Diffstat (limited to 'test-tnpair.nix')
| -rw-r--r-- | test-tnpair.nix | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix index 5d9fee2..eaabd9f 100644 --- a/test-tnpair.nix +++ b/test-tnpair.nix @@ -84,6 +84,7 @@ let "${tnpair.tumour.name}.cram" = samtools.view { outfmt = types.toCram; } (tnpairResult.alignments.tumour); "${tnpair.tumour.name}.fastqc.1" = check-fastqc tnpair.tumour.files.input1; "${tnpair.tumour.name}.fastp" = check-fastp tnpair.tumour.files; + snver = snver.call { ploidy=1; } (with tnpairResult.alignments; [ normal tumour ]); inherit alignments; }; |