diff options
| author | Justin Bedo <cu@cua0.org> | 2019-09-06 16:30:22 +1000 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2019-09-06 16:30:22 +1000 |
| commit | daa0a44e0844bdc957a0db1373e194986545eb23 (patch) | |
| tree | 892e477fc794674f37e36829860f6025bac3a821 /test-tnpair.nix | |
| parent | 7c61159d7ed296fce82c7518af4a4936e55990fd (diff) | |
strelka: default callSomatic to snvs
Diffstat (limited to 'test-tnpair.nix')
| -rw-r--r-- | test-tnpair.nix | 5 |
1 files changed, 2 insertions, 3 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix index 3601a13..f320f58 100644 --- a/test-tnpair.nix +++ b/test-tnpair.nix @@ -71,9 +71,8 @@ let "cnvkit.pdf" = cnvkitResults.plot; "octopus.vcf" = tnpairResult.octopusVars; "octopus-somatic.vcf" = tnpairResult.octopusSomatic; - #strelka = tnpairResult.variants; - #strelka-indels = tnpairResult.variants.indels; - #"strelka.snvs.vcf" = tnpairResult.variants.snvs; + strelka-indels = tnpairResult.variants.indels; + "strelka.snvs.vcf" = tnpairResult.variants.snvs; "strelka.gl.vcf" = tnpairResult.glvariants; gridss = gridss.callVariants {} (with tnpairResult.alignments; [normal tumour]); gridss2 = gridss.call (with tnpairResult.alignments; [normal tumour]); |