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author | l-d-s <distefano.l@wehi.edu.au> | 2018-12-11 14:17:22 +1100 |
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committer | l-d-s <distefano.l@wehi.edu.au> | 2018-12-11 14:17:22 +1100 |
commit | f0357e09b8c473b55d22c4632692fcc79021570d (patch) | |
tree | 9c92993d1f0c788a162159e6440ea958eae3e35d /tools/bowtie-index.nix | |
parent | 6742864b8f92f5d7d56da4901486b7e83a271e23 (diff) | |
parent | 10bdecf6c1338d7f531ddf7b41da14dfe4a4ac33 (diff) |
Merge branch 'master' of https://github.com/PapenfussLab/bionix
Diffstat (limited to 'tools/bowtie-index.nix')
-rw-r--r-- | tools/bowtie-index.nix | 22 |
1 files changed, 22 insertions, 0 deletions
diff --git a/tools/bowtie-index.nix b/tools/bowtie-index.nix new file mode 100644 index 0000000..98e529f --- /dev/null +++ b/tools/bowtie-index.nix @@ -0,0 +1,22 @@ +{ bionix +, nixpkgs +, flags ? null +, seed ? 42 +}: + +ref: + +with nixpkgs; +with lib; +with bionix.types; + +assert (matchFiletype "bowtie-index" { fa = _: true; } ref); + +stdenv.mkDerivation { + name = "bowtie-index"; + buildInputs = [ bowtie2 ]; + buildCommand = '' + mkdir $out + bowtie2-build --seed ${toString seed} --threads $NIX_BUILD_CORES ${optionalString (flags != null) flags} ${ref} $out/ref + ''; +} |