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| author | Justin Bedo <cu@cua0.org> | 2018-09-26 10:53:53 +1000 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2018-09-26 10:53:53 +1000 |
| commit | 98672cb1bba7221c5c8ecc363243cb47fcd13f47 (patch) | |
| tree | c5c73fc08323a8350a0ba80aae7a7232fed19171 /tools/bwa-index.nix | |
| parent | 45af0256cf75fa28e75b6cf6874df0c48aac38cf (diff) | |
refactor, add mosdepth, and fixes for bwa
Diffstat (limited to 'tools/bwa-index.nix')
| -rw-r--r-- | tools/bwa-index.nix | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/tools/bwa-index.nix b/tools/bwa-index.nix index 8ca0eec..b5e3779 100644 --- a/tools/bwa-index.nix +++ b/tools/bwa-index.nix @@ -15,5 +15,6 @@ stdenv.mkDerivation { bwa index ref.fa mkdir $out mv ref.fa.* $out + grep '^>[^ \t]*_alt$' ref.fa | tr -d '^>' > $out/idxbase.alt || true ''; } |